mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTTTGTTTTTTTTTTTT ACTGAAAGAACATTAAAAG AATCATTTCTTTTTGTTTTGTTTTTTTTTTTTCTTCTTCAAACTGAAAGAACATTAAAAGGAAGTGCA GGGGAAATCGGGAGACAACAGACCAACAGAACCCTTCACCAGTGGGCTGGACTAGAGTGGACACACACACACACACACACACACGCTCTGATGATGACTACACTCCTCAGGCCCTGGCACCAGTTTAAAGTGGTCAGTGAATCAGATGGAAATACTCCAGGCCTTGATTGTAATGGACCAGTCAAGCTGCGTCACCACTCAGAGGCCCCCTACCTCAGTGTGGAGGGGTGGGTGGAGCTGGTCAGGGGTTGGAATTCCTACTCCCCACTGTAGTCAGTTTTTTTAATCATTTCTTTTTGTTTTGTTTTTTTTTTTTCTTCTTCAAACTGAAAGAACATTAAAAGGAAGTGCAGTCCAGTCCTTGGACCAGATGCAGGAGCAGGCTGTGACCTGGGGGTAAAAGTCATCCTCCAGGTCCCCCCTCTCTTTTCCATCTTCTCCATCACTCCATCCATCCTCTCTCCTCAGCCCATGT 3 2 5' arm Cynoglossus_semilaevis mirnest 100 100 -16.7 ...((((((((((((...(((((((((..(((.......)))..))))))))).)))))))))))).. (-16.7)