mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGCTGCTGTTGCTGCA CATCATCAGCATCACAGTCT GGGTGAACTTCGAGGCCCTGATCATCGCCATGGCAGTGTTAGGCGGGACTATCATCATCAGCATCACAGTCTGTTGCTGCTGCTGCTGTTGCTGCAAGAAACGTCAATCAAGGCCAGACAGAGATGAGGAGAGGTTTGCCAGGAG GGGGGGAGTGTGTTGGGTGAACTTCGAGGCCCTGATCATCGCCATGGCAGTGTTAGGCGGGACTATCATCATCAGCATCACAGTCTGTTGCTGCTGCTGCTGTTGCTGCAAGAAACGTCAATCAAGGCCAGACAGAGATGAGGAGAGGTTTGCCAGGAGGAAAGAGGAGATCAGACAGCGTGCTGATGAACGGAAGGTGGAGAGGAAGGTGAGGCATGATGACATCCGCAAGAAGTATGGTCTTGTCCCTGACTCTGACCACCCATACAGCAAGTTTGAAAATGAGTAAAGCAGAAACCTTTGTGAGAGTGAGGAGAAGTTGTTCAGATGGCCCGGCTCTACTCTGCTCCATCCTGTTTGGACTGACTATCAATCATCCTGTCCTGCTGACTGTTTTAGCTTAGAGAGCAGAGACAGCCTACTCTGAGAGACACACAAACACCTATATATCAAGACTGATTTATCATCATGATTCATCTAAATCAAACCTTTTGCCTATAATTATTAAATGCAGTTTTTATTAATTCATTTTAGGTTTTGAATGAAAATGATTTACAGTTTGAGAAAATGTTAAGTTTGTCACACGATTAAGAAGTTTGAGGAAGTCTGTAATATTTACTTTGCTGTTGGAGACATGGCACTGAGTGGAGCTTCTCAACTTTCTGCACATTCTTTGTATTTTTGAAATCTGATTTAAAGAGCCTTTGTTTTAAATTACTGTAATATCTGTGAGTACGTTTGCGCTTTGTATATATTTCATAAACCAAGAACATAATCTGCTAAATCGGATACATTTCCTAATAAAATTTTACTTTTAATGC 5 1 3' arm Salvelinus_fontinalis mirnest mir-598 0.000008 dme-mir-4968 0.00003 -42.3 .((((((((((.....(((.(((.((....((((..((...((((...((..((.((.(((((.((((((.....)))).)).))))).)).))..))...))))...))..))))....))))).))).))))))))))..... (-42.3)