mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAACAAACATTTTTTGTGTT TGCAAAAAGTTTTTTTTTTTT TGCTACCAAACTAAACAAACATTTTTTGTGTTGAATGCAAAAAGTTTTTTTTTTTT CTCCCTGTGCTCCTCCAGCTTTATTGATAGTTTAAAATTACATTTCTATGTTCTAGGACTTCAGTTGCATTTCCTTCCGACTTAAAAACTGAGTACAAGCAAATGGTATTTTTACAGTAGTCTAAGTGATATTGTACAAAAATAACATTTGATTTCTGTGAAAACATTCTCCACTCCCAAATAACTGCTAATTCTGATGATCTGGCAACTGTGTTCTTGATGCACATTTTTCCTCCAAGGTAAAAGTTTCCAAATCGTTTTTTTGGGGGGGGAAACGTCTACCTTGGACTATTTACCCATACTCCTTTAAATTGTAAACAATTATTTGTTTTTCATTATAAAAGAACTTAAGATTCTTTCAATTCCTCCAAAAATGTAACGGCATTTATCGATATAACACATCATTTATGTTATCGCCCGGCACTTAGCCGCTTGTAGGGCCCAGATGCAGATGGATCATATGGTGTGAACTGTTACCCACGTCATACGCTCTTGGCCAACTCATATGTTATCCCGCTAAAACAAACCATACATGGAAGTTCAGGTTTCTTTTTACTCCCTTCTTACTGAGACTCACTTTCCACAAGCCCAGAGGTCCTCTATATCCAATATACTTAGCCCCATTCATTCATCTCTGCTCACCAGTGGCTTGGAAAGGGGGGATTCTTTAACAAAGCATTAAACATAAACACTGCTACCAAACTAAACAAACATTTTTTGTGTTGAATGCAAAAAGTTTTTTTTTTTT 4 0 5' arm Salvelinus_fontinalis mirnest 100 100 -8.4 ............(((.(((.(((((((((((...))))))))))).))).)))... (-8.4)