mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGTTTGTGAGTTTCTAGGCA ACTAGAAAGTTCACTTACTGTT TTAGAATAGAAACTCTTGATACAGTTTGTGAGTTTCTAGGCAAATAGATTTTTCTATGACTAGAAAGTTCACTTACTGTTGTACGAGTTTTAAACTTC TCGCATTTTTTTTTTTTTTTTTTAGAAAAATATATATATATATATTTAATCAGAACTTGCAGTTAATATCAAAATATAAAATGACTTGAATCAACAAAATTAAGGTCATAAAGTTTTCAGGCAAATCCAAAAAACGAATTTTTTCATTTTAATGAACAATAATTATGAGATTTATTACTGTAGTCCAATTATTGCAATGAACTTTTTTTTCTTTATGCAAATCAATCAAAAAAACGTCTAATTTTTTACAATTACAAACAAATCGATAACGCTACAAACTTGAACAATAAATATAACCACCTAAATTTCTACAAATGACGAGGTTTGTAAATGAGCACACCACTGGTTAGCAATGTAACAAGCACATTTATTCTTCTGTAAAATTTGAAGATAACGAGCGTAGGTTGGATTGATACATAATAAATTCTGGTAAACATCATTTGTGTTCAATAATTTTTAGAAATTCTGTTATTTCAGGCGAAATCTGAACTATATTCATTTTTTAGAATAGAAACTCTTGATACAGTTTGTGAGTTTCTAGGCAAATAGATTTTTCTATGACTAGAAAGTTCACTTACTGTTGTACGAGTTTTAAACTTCATTCTAATATCAAACAATGATTTGTTTCTCTGAAAATTATTTATTTCCTCGAAGTTTAAAAAGGAAATCTGTTGAATTTTCGCAAAATTGAAAAGTTTGTGCCCAATTTAAATTGCATATTTTGTTAGTTTAGTTCTACTAAAAGTTTTGATAGAAAAACTGAGTAGTAATAGCTCATTTTAAGTAAAATAAATCAAAAATTTAAGAGATTCTGATTTTTACAATAAATATCCGCTATAAATAAACAATCAAAT 5 1 5' arm Schmidtea_mediterranea mirnest 100 sme-mir-61a 2e-48 -30.4 ........(((((((.((..(((((..((((((((((((....(((((....)))))..))))))).)))))..)))))..)).)))))))....... (-30.4)