mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGCTGTTGGAGAAGATATTA AAATTATTAGTAATGGCCCGAA AAAAGAAGAATCGGCTGTTGGAGAAGATATTAAACAAAAAATTATTAGTAATGGCCCGAAATCTCATG TTTATTAAAACAACAAAACAACATCATGTCTGATATAAAATCTGTTTTTCTGGCGTTTTGCGACGCAACGAAAAAAGGATCAACAACGGCCACTGATAAAACAATCAAAAAGATATGCACTGACGCAAAATTATACACGAAAACATTTACGGCCAATGATGTTGATATCGAGTTCAGAAAATGTATCGGGAATCAGAAAAAAGAAATTGACTTTGCCGGATTTGAAAATTTTTTGAATAAGTTTTTCATTCCCGCATACGCTAAATCGTGTAAAAAAGAAGAATCGGCTGTTGGAGAAGATATTAAACAAAAAATTATTAGTAATGGCCCGAAATCTCATGGTGCAACTAAAGCCAGTAAAGATGGAGCGACTGAACGACTAACTGATGTCAAAGGATATACCGGAGCCCGAAAAGAAGCTTTTGATGCAGAAACTGGCAAAGGGAAAGGTAAAGAAGGTCGAGAATATGTAGTCGATTCAAAGGCAGCAGAAGGATATGTAGGAGGTTATAAAGGAATGAATTCATATGACCAAAAGAAATAAGCATAAACACAATAAAACAAATTTTATCAGTTTCTATGTTTTATTTAGAAATTTTGATTGAAATTTATATCAACATTGTAATGTATTTTGACATTTCATTCTTAACATTTGTTTATAGTCTTTTATTGGATAAATAATATAGCCTTATTTCAAAAAAAAAAAAAAAAAAAAAAATGCGA 5 1 5' arm Schmidtea_mediterranea mirnest 100 100 -8.9 ..........((((((((((..((.(((.((......)).))).))..)))))).))))......... (-8.9)