mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGGAGAAGGTGGACCGGCTG GCCAGTTCATCGAGTTTGCAA CGCCCTTCTGCTGCCAGTTCATCGAGTTTGCAAACACGGTGGCGGAGAAGGTGGACCGGCTGCGCTCCTGG TTGGGGACGCGGCCGGCTACCGAGCCCTTTGTGAGGGCGTGAGCTGCGCCTGATCGGCGGCACCATGAGCGTCTCAGGTGGGGCGCCCGCGGCGTCCGCCAGCTCTGCGCCGCCCACGCAGGAAGAGGGCATGACGTGGTGGTACCGCTGGCTGTGTCGCCTGTCGGGGGTGCTGGGGGCAGTCTCTTGTGCGATCTCTGGCCTCTTCAACTGCATCACCATCCACCCTCTGAACATTGCGGCCGGCGTGTGGATGATCATGAATGCCTTCATCTTGTTGCTGTGCGAGGCGCCCTTCTGCTGCCAGTTCATCGAGTTTGCAAACACGGTGGCGGAGAAGGTGGACCGGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGGGATGGCGGGTTGTCCCATCGTCTTCTTCCTGACCCTGGACACGCTGCTGGCGATCGCTTGTCGCCTTTTGCCACCGGGGTGCCGTTCGTACTGTCCCGCTCTGGGCTTCTGGGCGCCAGGCTATCCTTCCCCCGCTTGGCGCCCCCTGCCAACCTCACTGGCTCAAGAGTTGCTGGTCCTCTTGTCCTCTTCTGCGTTTCCTTTTT 5 0 3' arm Macaca_mulatta mirnest 100 100 -20.4 ........(((.(((.(((((((...(((((..((...)).)))))...))))))).))).)))....... (-20.4)