mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCTCAAAATA TTTTAGGACCGAGGGAATATA GGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTACTAGAGCTAATACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCGAGGGAATATATAGCATAG GAGGGTGCAACTGATAGAGGAGAACGCAAGGCTAAAGGAGCAAGCGTCCAAGATGGAGATGCAGGTCGCCGCTGATCCACTGGTGGTGGTGTACGATGAAGGGCAGTCATCTGAGTCTGTCACCAACACGTCGTATCCACGCCCTCCCCTCGACACCGAGGACAGCTCCGACACATCTCTCAGGCTCGGATTATCACTCTTCAACTCGAAGTGATTGGCTGGAAATTACCCGAAGCGAAGTGACGCTTGGTCACGACCAACTCCTGAATCGAACCACGCGCTGCATTGAATAAACAGTTTGAGCGCACTGGATGATGTGTGTAATCTAAAAGAAGACTGGCTTCTGTTATACTCCCTCCGTCTCAAAATAACTGTCTCAACTTTGTACTAGAGCTAATACAAAGTTGTACTAAGCTTAAGACACTTATTTTAGGACCGAGGGAATATATAGCATAGTGTGGTACAATAAGAGAACAGGTTCTTGTGATATTACCTGCTACTGTTTTTTCCCGTCCTTGTCCTGTGCTGTAAAGTTTTCGTGGACCCCTGAGTATTCAGTAGAACTCTGAGTTGCTTCAGTCCTTGCAAGTAAATCAACCACCTGCACAGTGGCATATTGATTTCTACATAAGTAAAAAGAAAAAGTTTGTTCT 3 0 5' arm Hordeum_vulgare mirnest MIR1122 4e-44 100 -39.7 .(((.....((((.((((((.((((.(((((((.(((((((((((((((.((....)).))))))))))...........))))).))))))).)))).)))))).)))).))).... (-39.7)