mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGAGGCAGCGCTCTCGGGAC CCTGGGCTCTGCTCCTCCTCA TTGGTCAGGAGGCAGCGCTCTCGGGACATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACCC TTGGTCAGGAGGCAGCGCTCTCGGGACATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGATCCTGGGCTCAGTCTGCCCTGACTCAGCCTCCCTCAGTGTCCAAGTCTCTTGGACAGTCGGTCACCATCTCCTGCACTGGAACCAGCAGTGACATTGGTGGTTATAATGACGTCTCCTGGTACCAGCAGCACCCAGGCACAGCCCCCAGACTCCTGATTTATGATGTCAGTAAGCGGCCCTCAGGGGTCTCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATGTCTGGGCTCGAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATAGGGGTGGAAGCACTTACATCTTCGGTGCTGGGACCCGGCTCACCGTCCTAGGTCAGCCCAAGGCTTCCCCCACGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCAAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGTCGTGAAAGTGGCCTGGAAGGCAGATGGCAGCGCTGTCAACGCGGGAGTGGAGACCACCACGCCCTCCAAACAGAGCAACAACAAGTATGCAGCCAGCAGCTACCTGAGCCTGACGTCCGACCAGTGGAAGTCCCACAAGAGCTACAGCTGCCAGGTCACGCACGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTGCAGAATGTTCATAGGTTCCCACCCCTACCCCACCCACGGGGGCCCTGAAGCTGCAGGATCCCAGGGGGAGGGTTCTCTCTCTCTCCATCACAAGGCATCAAGCCCCTTCTCCCTGCACTCATGAATCCCTCATTAAAAATTCTCATTGACAATCCAAAAAAAAAAAAAAAAAAAAAAACCC 3 2 5' arm Macaca_mulatta mirnest mir-650 6e-20 mml-mir-650b 1e-23 -25.4 ..(((.((((((.((((..((((((.(((.......))).))))))...)))))))))).))). (-25.4)