mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAAACATTTCCGCACAAAC GTGTGCGGAAGTGCTTCTGCT AAGAGTACTCTATAAATCTAGTGGAAACATTTCCGCACAAACTAGATTCTGGACACCAGTGTGCGGAAGTGCTTCTGCTGCATTTTTAGGGTTTGTC TTGGCCATCGTCCGTGCGCACCGCCCCACGTCCAGGTGAGTCTCCCATCTGCGGAGACGCGGACGCGCCGGCCCGCGGTTGGCTTGCGGAGCGCGGTGGACGGTTTGGCGCCCACCAGGTGATCCGTACTTTGGATTGTTAATTTCTAGATTTGGCAATTCTTTGCTGAAGTCATCATGAGCTTTTTCCAACTCCTGATGAAAAGGAAGGAACTCATTCCCTTGGTGCTGTTCGTGAGTGTGGCGGCGGGTGGAGCCTCGTCTTTTGCTGTGTATTCTCTTTGGAAAACCGATGTGATCCTTGATCGAAAAAGAAATCCAGAACCTTGGGAAACTGTGGACCCTACTATACCGCAAAAGCTTATAACAATCAACCAACAATGGAAGCCCATTGAAGAGCTGCAAAAGGTCCGAAGGGCGACCAAATGACCAGCCCTCGCCTCTTTATTTCAAAGAGTACTCTATAAATCTAGTGGAAACATTTCCGCACAAACTAGATTCTGGACACCAGTGTGCGGAAGTGCTTCTGCTGCATTTTTAGGGTTTGTCTACATTTTTTGGGCTCCAGATAAGGAATTAAAGGAGCACAGCAATAACTGCATTGTCGAAGAGTTTGTGCTTATTTTCTTGTAAATTTGAATGTTGCATATTGAAATTTTTGTTCATGATCTATGAATGTTTTTCTTAAAATTTATAAAGCTTTGTAAATTAGATCGTCTGTCATAAAATGCCATTTGTGCAAGATTTCTCAAAGATTAGATATATATTTAAATGGAAGAGAAAATATTTTTATGGGAAAAAAAATACTTTTGAACCATTAAATTTTCTCTTTTAAATAAAAAAAAAAAAAAAA 4 0 5' arm Macaca_mulatta mirnest mir-147 4e-16 mml-mir-147b 4e-40 -36.1 ......((((((.((((.((((((((.((((((((((((.........((((...)))))))))))))))).)))))))).)))).))))))..... (-36.1)