mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGACAGAGGGAATATT TACTCCCTCCGTTTCAAAATA AATCATATATGCTACTCCCTCCGTTTCAAAATAAGTGTCTTAAGCTTAGTACAATTTTATACTAGAACTAGTACAAAGTTGAAACAGATATTTTGGGACAGAGGGAATATTATCAACTAA TTTTTTTTTTTTTTTTTTTTTTTTCACATACAAACATCAATCATATATGCTACTCCCTCCGTTTCAAAATAAGTGTCTTAAGCTTAGTACAATTTTATACTAGAACTAGTACAAAGTTGAAACAGATATTTTGGGACAGAGGGAATATTATCAACTAATCTTTATTTGAAAGAGACATGCATTTTTCTTATTCAATGGGACTCACATTCTTGTGATATTTACTTGTTGTCCGAAGTAACAGCAGCGGCAGCAGCTTGTGCCTGCCTCTTAATGGCAAATTCGACCACCCTATCAACCTCTGGCAACGCCGCCTTGGCAGCATCGAGCTCGCTAAAGCGATCCATCCATGCCGCCAAGAGCGGAGTCTTAACAGGATCAAAGATCTTGGTTCCAGACATCACTTCTGTAGCGTTCAACCAGGAGAGCAAGCTCCCAAGTGAAACATCCACAAGTCCGACGGGCTCACCACCAAAGTAACCCTCCCCCTTGGGGGCACTCCCTCAGGGGCTCCCTCCAACATTTTCCAACGGCCGNCAAAATGTTTTGATTTAAATCCCCTCCGGGACTTCTCCCTCCCTCCGGTCTTGGCCCCCTCCCGGTTGGCCCTTGAAACCCCAAGGGGGGGCCGG 3 0 3' arm Hordeum_vulgare mirnest MIR1122 6e-28 osa-MIR812a 0.0004 -29 ........(((.((.((((((.(((((((((((..(((.((((.(((.((((..(((((...)))))...)))).))))))).)))..))))))))))).)))))).)).)))....... (-29)