mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGAGACAGAGGGAGTACT TATACTCCCTCCGTTCTAAAATA TAAGTTCCACGTATGCTGTTGATATACTCCCTCCGTTCTAAAATAAATGTCTTATACTTAGTATAAATTTGTACTAAAGCTAGTACAAAGTTGAGACAGTAATTTTGAGACAGAGGGAGTACTAACTTTTGCCAAAACAATA CGGCACGAGGCGAGCTGCAGCCCGGCGGCGCCGCGCCGCTGTCGAGCACGGAGAAGGGGGTGGGCCCGCAGATGAGCTTCGACGGCCGGCTAGAGGAGTTCGCGCCTCCGAGGAGGCTGGCGGTGGAGGAGATACCCGCCATCGTCGACGACTTCAGGAAGGCCGCTAGGAACGCCATAGACGCCGGTAAGTTCCACGTATGCTGTTGATATACTCCCTCCGTTCTAAAATAAATGTCTTATACTTAGTATAAATTTGTACTAAAGCTAGTACAAAGTTGAGACAGTAATTTTGAGACAGAGGGAGTACTAACTTTTGCCAAAACAATAAACAT 3 0 3' arm Hordeum_vulgare mirnest MIR1122 1e-26 tae-MIR1137 0.000002 -36.4 ..............((.((((...(((((((((.(((.((((((...(((((((.............(((((((((....)))))))))..)))))))...)))))).))).))))))))).))))....)).......... (-36.4)