miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAACCGGACCGAACCGGAAAT
species: Populus tremula x Populus tremuloides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|60697656|gb|DN487924.1|DN487924 R017A10.3pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R017A1 

AAACCGGACCGAACCGGAAAT
|||| |||||| ||||.||||
TTTGACCTGGCCTGGCTTTTA

EST sequence (targeted fragment marked with yellow):
TTTATTGTTTCTTTGAACGCTAAAACGTCATGGTTGATGAAATGACAAAGTGGCATTTATTTGATATAGATAGTTTGCTTTCATGCTTCTGATAAAATGTTTGATTCATGGTTTCTTTGTTATTTTAAGCTCTCTCTGTATTTTTTTAGATAGTTATCGTTATGTGTAGACCTGATTGATTTATTGGCTCATGGTTTATTTGTAATTTATTAATCTATTTGGTTGTTGCCATCTTAGTTATGTTATTTGAGTATTAAGCACCTTGAATATGGCATCTGCAGAAACTTCTTACATAAGAAATTAGGAAGGAGTGTTAATATTTTTCATGTATGAATCTGACCCCTGATTTTTGTGATCTTTTATGAGAATTTTGTCTTTGTATCATTAGCCCAGATTTCCTCATTATCGTTGGAAAGACTATAAAAATGAGTTCCTAAGTTGAAAAAAGCTCTTCCATATAGCGTAGTAAAGGAAAGTTTTGTTGTCAAAAGCTCGAAACTTATAATTTATTCATTTTTCATCAGATGTTCAACTGCCATGATTTGGAAAATAGACAAGATATGCTAACCTTGAAGTAGGGCTGTGCATTTTCGGTCCGGTCCAGTTTTGGACCAAAATAAACAACCAAATCAAATTTTTTTTCTTCAAGTTTTTTCTCCTTCCAAACCGGTTCAAACTGAAATTATTCCGGTTGAG


gi|60713448|gb|DN503258.1|DN503258 X072G08.5pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X072G0 

AAACCGGACCGAACCGGAAAT
 |||||.|||||||||.||||
ATTGGCTTGGCTTGGCTTTTA

EST sequence (targeted fragment marked with yellow):
CAGGACCTCACTTTCAGTCGGAAATGGAAGCATCGTCGAGTAAGTAGCAATTCTAATTTTCAGGCAAACACACACACACACAGCCCTTAATTTGCTTATCTTAGAGACTCTTCGATGTTATGGTTTGTTTTTCGTAAGAGAATAAAGCTTACTAGAATTAGGGGTGAGCATTTCCGGTTCGGTCCGGTTTTCACCCAAAAAACTAACCAAACCGATTTATTTATTTATTTTTAAATTAAAACCGAAACCGAACCGAAACCGGTTCAAACCGAGCATTTTCGGTTCGGTTCGGTTAATTGAAAGGAAAAACCGGAAAAAAACCGATTTCATCTTGGCCAAGCATATCAAGCAAGTTTTCTGAATTAGAAAGCCAAAAAGAACAAGATTCAAACGAAAATTTAAAAAAATATTTATCACAACATCCATTACATCCATTATAATAATCACAACATAAATAGCAAATCAACATTCTTGTAAATAAATATAGAAAATAAATACATAACAGATCTACAAAAAAATAAAATAAATAAACAAGG


gi|60713448|gb|DN503258.1|DN503258 X072G08.5pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X072G0 

AAACCGGACCGAACCGGAAAT
|||||||||||||||||||||
TTTGGCCTGGCTTGGCCTTTA

EST sequence (targeted fragment marked with yellow):
CAGGACCTCACTTTCAGTCGGAAATGGAAGCATCGTCGAGTAAGTAGCAATTCTAATTTTCAGGCAAACACACACACACACAGCCCTTAATTTGCTTATCTTAGAGACTCTTCGATGTTATGGTTTGTTTTTCGTAAGAGAATAAAGCTTACTAGAATTAGGGGTGAGCATTTCCGGTTCGGTCCGGTTTTCACCCAAAAAACTAACCAAACCGATTTATTTATTTATTTTTAAATTAAAACCGAAACCGAACCGAAACCGGTTCAAACCGAGCATTTTCGGTTCGGTTCGGTTAATTGAAAGGAAAAACCGGAAAAAAACCGATTTCATCTTGGCCAAGCATATCAAGCAAGTTTTCTGAATTAGAAAGCCAAAAAGAACAAGATTCAAACGAAAATTTAAAAAAATATTTATCACAACATCCATTACATCCATTATAATAATCACAACATAAATAGCAAATCAACATTCTTGTAAATAAATATAGAAAATAAATACATAACAGATCTACAAAAAAATAAAATAAATAAACAAGG