| mature miRNA: AAACCGTGCAAAGGAGGTCCC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86260916|gb|CI066591.1|CI066591 CI066591 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou AAACCGTGCAAAGGAGGTCCC EST sequence (targeted fragment marked with yellow): GTGTGTGAAACTGACATCTGGGTTCCACGGGTTTTATTTTTTTAATCAAATTTCCACGTCCATGCCCCGTGGGACAAAGACCTAGTCAAAGGAGCGCGCCACGTCAGCCAAAACCAGGCACAATACTGCCGAGGGATCTCGTTTGCACGGTTTTATAAGTTGAAGGATGTGTTGTACTCGGTTTTGTACTCAGCGACAAATTTCGGACTCGGCGACAAATTGAGAGACCTAAGATGAACTTATTCCCTCTCACTTCTCTCTTTTTCTCTATGTGTGGCCGGACTGCCGGAGGCACGGCGAGGCGGAGGGTGCGCGACCGCTCGCCGCTAGGGTTTGGGGCAAGTTGGGCGATAGGGATGAGGAGGAAGGAGGAAGGGATGAGGGAGTGATTCTCAGGTTGCTTGTTTCTTCACCGATTCTCAGG | |||||||||
gi|44678995|gb|CR292429.1|CR292429 CR292429 Oryza sativa library (Han B) Oryza sativa cDNA clone y690f12p5, mRNA sequence AAACCGTGCAAAGGAGGTCCC EST sequence (targeted fragment marked with yellow): CCTCTGTGGTACCGGGAATTCGGCATTATGGCCTGGGAGAGTCGAGTGGGGCCAGTTCAGTGGCTGAAACCATATACTGATGAAGTTCTAGTTGAACTAGGTCAACAGGCTGTAAAGAGCCTCCTGGCTGTTCCAGTAAGCTTTGTGAGCGAGCACATCGAGACCTTGGAAGAAATTGACATGGAGTACAAGGAGCTGGCTCTAGAATCGGGCATCGAGAACTGGGGAAGGGTTCCAGCTCTTGGATGCACCTCATCCTTCATCTCCGACCTTGCTGATGCCGTGGTCGAAGCCCTGCCCTCCGCTTCCGCTCTCGTGACGAAGAAGGTGGACGAGAGCGATTCCGACATGGACCTGATGCACTACCTGAGCAAGATGTTCTTCGGCTCCATCTTGGCGTTCGTCCTCCTATTGTCGCCAAGGCTGATTTCCGCTTTCCGGAACACCCTATTGTAAGTGATGGTGGCTTCTTTTGTATGGTTTTTTGCACTAGGGGTTTGGCTTGAGTAAGTAGAAAGGCAGGCTCGTGGGATGATAGTGAATAGTGATGGTTAAAGTTCCCCTTTTTTACAGAAGTAATATGCGTGAAGTCATTGGACAGTAACTTAAAGTGGGGGTTTAAACAAAGGGACCCTAAGGGGGAAATTGCCAGTCTGTACCAGTTTTCTTGTGCTGGTACAAGGCAGNCTATCC | |||||||||
gi|112786696|gb|EE591266.1|EE591266 NEW_RNG112-H06 Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mRNA se AAACCGTGCAAAGGAGGTCCC EST sequence (targeted fragment marked with yellow): TGTCATCAACGACATGGTTCTCCGATTCGTGTCGATGACGCGAGACCCACCGCTGATCACCGGCGACGCCCTGGCGCTACACCCGATCGACGTCTGCCACCGAAGCCTCCTCCATGGGACGCCGCCACCACCTCCGCCGAGCACCGGCCGCAAGAGGCAGCGGGAGGACGAGTTCGTCCCGTCGGTGACGGAGCTGGAGCAGGCGGGCGTCCACTTCAGCCGCAGCCCAACGCGGAGCCTCCGCGACATCAGCTTCCGGCCCGGCGACGACGTGCGGCTGCTCAGCGGCGGCGTGGTGTCAAATGGGCTGGGCAGCGACAAGGCGGTGGCGAGGATGTTCAACCGGCTGGCGAAAAACGCAGTGCTGGACCGGCGGAGCCCGCTGCGCGGCGTGCAGGGGCAGGTGAACGACCACCGGGAGAACGCGTGGAACGAGTGGTGGGCCACGGCCGGAGCTGAGGGCGGAGCAGCTACGGGCCGCGGGAAGCTCCTCTCCTCCAGCCGGTCAGCGCCCCGCGCCCCTCCGTCCACCTCCGCGACTTCTCCCCCGCCGGCCGGCCGCTCCGTCCCTCTGCTCCGGCCACGACGCGCCGCCGGTCCTCTTCTCTACCGGCTGCCGACCAGCCGCTCCGCCCACAAGTTGTGGGCCACAACACGCCGCCGCTCCGGCCACCGACCCGCCGCTGCCCGCCCCGCTTCGCCCCTCGCCTCCGCCCTCTGCTCTGCCGCTGCTCCGGCCGCCGCCCACCCCGCTCCGCCGGCTGGAGAGAGAGAAGTGGGAGAGAGAGATGAGGGTAGTGAGGATGACGTGTGGGCCCCACCACTTTTTATTATTTGTGTAAACCTGACATGTGGGTCCCACGGGTTTTATTATTTTTTGGATCAAATTGCCACATAAGCGCCACGTCAATGCCCACGTTGGACGAAAACCTAGTCAAAGGAGCGCCACGTAGGCGCCACGTCAGCCAAAACCAGCGACTATACCGCTGAGGGAGCTTCTTTGCACGGTTTTGTAAGTTGGTTTTGTGCTGCAGAGATAAAAATTAGACTGGACGATACCTAAAGTGAACTTATTCCTAGTGGCGG | |||||||||
gi|29685916|gb|CB682191.1|CB682191 OSJNEf09D15.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf09D15 3', mRNA sequence AAACCGTGCAAAGGAGGTCCC EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGAATTCGGCACGAGGGGAGCGTGACCGGGGGTGGTCGCGTGCGTCGATGGGAGCGTCGGGAGAGGACTCGGCAGCGAGCGGGAGGATAGGCAGGGAAGGGTCGAGCGGGATGGACGACGACGATGCAGGGCTCTCGGCGCCTTGCTTGACATCGATCTCCATGCAGCTGTGGGCGGCTGCGGTCGCCGCCCGCCGCAGGCTCCGCTCTTCGTCGCTCCGCCTGCTTGCTTGCCCGTCGTCACCACCCGCCACCTGCTCCACTCTCCATCGCTTCGCTTGCCTGCTTGTCCGCCGCCGGCACTCGCAGCCACGCTCGTCCACCGCTGCCCGTCCTGCCTCCTGCCTGCTTCGCAGCTGCCGCTCGCCTGTCGCCGACTCCGCTCTCCGCTGCCGTCGCGGTGACTGCTGCAACTTTCTCCTCTATGGCAAGTGGAAGAAGAGAAGAAGAAGAAAATAGAAAGGAAGAGGATGATGCTGACAAGTGGGCCCTTCCTATTTCCTTCTCACTTATATGTGGTCCCACATATTATTATTGTTTTTATTTTTTGCTGACTAGGATGCCACGTCAGCAAAAACAGACGTCTATACTGCTTAGGGACTTTTTTGTACGGTTTTACATAGTTGAGGGGTAAATATTTCTGGTTTTGCAGTCAAGGGACCTCAAAAAAAATCTCACTGCTAAGTTGAGGGACCTGGCGTGAAATTGTTCCATAGGAAATTGGGGCCGTGTGCCAAAAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|88299620|gb|CI574733.1|CI574733 CI574733 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone AAACCGTGCAAAGGAGGTCCC EST sequence (targeted fragment marked with yellow): GGTGGATCGGTTTTACCGGGATCACCAAATGGACCGTGTTCTTCTGAGCTCTCAATTGTCATCACAAAGCGGTTGTTAACACAAGGGTTCAACAAGGAAGCGGTGGTATCAACAGCATAGGATTTGCTGTTATCAGAAAGGGAAGCTTAAAATTGAGATGTTATGCAATTGGTGGACTTGGGGGAGGAGAGAATTTGAATGATCCTTTAAAGGAAAGCAATAATGGACCTGTTTTGCACGGATTCAATGGATCTAGTGCTTCCTTTCGGACTGTTGGTGCTAAAATCACTCAGGAAAATGGTGATTTCTTTGTTAGCGATGCAGAGGGTGACCCAGACAAACCAACGTGATGGTTTTTCCTCTATTGATGAGGCTATAGGCGCATTGCATGAAGGAAAGTTTGTTATTGCTGTAGATGATGA | |||||||||