| mature miRNA: AAACGAGGTTTGTTACTTTGG species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117708615|gb|DB703448.1|DB703448 DB703448 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1079CE1 AAACGAGGTTTGTTACTTTGG EST sequence (targeted fragment marked with yellow): TCGGTCTCTACATGTACGATGAAGCAAAGATTTAGCGTGTCGCATAAGCCATTCTTATAAAACCAGGTTTTTTAGACTTTTCCAAAGAAACCTTCTTCTTGCGCCATTCCAAGTAGTAAAACTCGTTTCGATCATGCTCCGTCTAGTCGTACAATTACCACTGTAACTATCGTTTTCGCCCTGCGGCCATGTCCGCCGACGCCGGAACCCTAACCCTAGACTCAACCACTCTGTACATAACCGCTCTCAACTCCCTCTCTGATAAATCCTCATCAAATTCAATCCCATTGTCCCTTCCTCTCCCTCCAATCCCTTCTTCTATCCCCCAACCAAAACTCATCCCAAGAACTCGCTTTATCATCGACGGTTTCAAATATGCCGCTGATTTCTCCGTTTCTTACTTCCTCTCCCATTTTCACTCCGATCACTATACTGGCCTCTCCTCTAATTGGTCTAAAGGTATCATATTCTGTTCCTCCATCACTGCTAACCTTCTCATCGAAGTTCTCAATGTTCCCGCGCAATATGTAGTATCTTTACCGCTCTCCGAAGCGGTTCTAATAGACGGTTCTGAAGTTCTTCTCATCGATGCCAATCATTGTCCCGGTGCTGTGCAGTTCTTATTTAAAGTTCCAGTTAGTGATGGAAAATTTGAGCGGTACGTTCACACAGCTTGC | |||||||||
gi|116237491|gb|EG364470.1|EG364470 chan00299 Tomato root of CBF1-5 transgenic plant library Solanum lycopersicum cDNA clone LEC AAACGAGGTTTGTTACTTTGG EST sequence (targeted fragment marked with yellow): ATTCCCCGGGTCGCACCCACGCGTCCGGGGTTTTTAAGTCAGTTTTCTGCTCAAAATGCGTCTACGGTGTTGCCCATGGAGTGTGGATTTGTTAATTCTTTGGATGAGAATGGCGTCGCTAAATGCTCTGAGGTGGGGATTTCGGCAGTTCAGCAAATGAAATCGGAGTTAGATGCTGATTGCTTTAATTTGATCTCGCAATCTCGTATTTTGGAGACTGAATTTAGCTCATCTTCTGACAGTGAATCATCCGAGCCTATTGAAGAACATTTAAATAGGAAAAGGAAGAGGGGAACACGGAAGAGTCTTAAATTAAGTCTTGAAGACATGGTAAAGAAGTTGATGGACAAGCAAGAGCAGATGCACAAACAATTAATAGAGATGCTAGAGAAGAAGGAAGAGGAGAGAATCATTCGGGAAGAAGCTTGGAAGCAGCAAGAGGTAGAAAGGGCAAAGCGGGATGTGGAGTTGAGAGCTGAAGAGACATCTAGAAACTTGGCTCTTATTGCTTTCCTTGAGAATCTGTTAGGTGAAGATTTCCAAATTCCAAAATCATCAGAAGTAACAAGTCTCGTTAAAGATGAAGGTGAAGTTCATGGTCAAGAAGCTGACATTAGATCCGATCCATGTAATAGGAGATGGCCAAAACTTGAAGTACAAGCCCTTGTATCAGTTCGTACTCGTTTAGATCACAAGTTTCTTAAAGGAGCTAAAGGATCCGTGTGGGAAGAGGTAGCGGATGGATTGGCTAAGATGGGTTACATTCGAACAGCAAAGAAGTGTAAAGAGAAATGGGAGAACATTAACAAGTACTATAAAAGGACAATCGACAGTGGTAAGACGCGTCAAAAAACTACAGATCGTGTCCCTATT | |||||||||