| mature miRNA: AAAGGGACGGAGGGAGTACGT species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|35992459|gb|CA275099.1|CA275099 SCBFSD1034D04.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCBFSD1034D04 5', mRNA seque AAAGGGACGGAGGGAGTACGT EST sequence (targeted fragment marked with yellow): TCCAGAGGCTTGTTAGGGAAATTGCACAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCATGCGGTGCTTGCCCTCCAGGAGGCTGCTGAGGCATACCTTGTTGGCCTGTTTGAGGACACCAACCTGTGCGCCATCCATGCTAAGCGTGTGACCATCATGCCCAAGGACATTCAGCTGGCAAGGAGGATCCGTGGCGAGAGGGCCTAATCCCCCTCAAATCATCGTGACAAAATGAAGCCTTGTGTCGTAGCAATGATTTTAATCTGGTGCCGTTGTAAGGACATATGAGTAGGGTTTGTTTTGTGGATCATAAGTTTCTGTACTGCCGCACTATGTGTTGCTGCTACCTTCGCTGGTGTTATTACTAGGGTCGAATGCTTAAATTGTCTAGTCTTGTAACGTGCTGACAGTCTGTGACGTGAATGAGATGTACTCCCTCTGTCCCTTTT | |||||||||
gi|36018439|gb|CA283628.1|CA283628 SCSBSD1057C05.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD1057C05 5', mRNA seque AAAGGGACGGAGGGAGTACGT EST sequence (targeted fragment marked with yellow): AACAGTAATACTGTCAGTAGAGCTCTGTACTACTCCCTCCGTCCCATTGAAAGTGTCGCCCGGGAAACGTGTTTGTGAGGGGGGCACGCTTTTCCAACGACACTTTCAATGGGACGGAGGGAGTAGGCCGAGAACTCAAACCACAAAAATGTCAGAGGCAGAGGCCGTGCGTGTGATCGGCCTATGGCCGAGCCCGTTCGTGATCCGCGTCCTGATCGCGCTGAAGCTGAAGGGCGTCAAGTACGAGTTCGTGGAGGAGGTGGTGGGCAAGAAGAGCGAGCTGCTGCTCAGGTCGAACCCGGTGCACAAGAAGATCCCCGTACTGCTCCACCACGGCAAGCCCATCTCCGAGTCTCTCATCATCGTGCAATACATCGACGAGGTGTGGTCCTCCGACGCGCCGGCCTTACTCCCCGTCGACCCTTACACCCGTGCGGTCCATCGGTTCTGGGCACAGTACGTCGATGACAAGGTCCCTTCAGCGATCCGCATACTCATGGGAACGGATGACGAGGGCAAAGACGAAGCGGCGGTGCAACTGTCCGCTGCCCTGCAACTGTTGGAGGAGGCTTTCGCGAACTTCACCAGGGGGAGCACTACTTCGGCGGC | |||||||||