miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAAGTGAATTCCGGGAAACAA
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73935347|gb|DT518657.1|DT518657 WS02438.B21_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02438_N0 

AAAGTGAATTCCGGGAAACAA
 |||| |||||| .|||||||
GTTCAATTAAGGGTCTTTGTT

EST sequence (targeted fragment marked with yellow):
GAAAAAATGACAGTAAAGTTGGTGGATGCAACCATTTCAAGCTTTGGCAGTGTGTTTGAGAAATTCAAAGCAGAAGCACCCAAAAACAAAGTTAATCTCATCCTTTTCCTGGCTGATAATGACCCTTCTACCAATCTCAGTTGGTGCCCTGATTGTGTGAGAGCTGAACCTGTAATATTGAAGAAGCTGGAAGCATTGCCAGATGACGTGGCACTTCTGCGAGCCTATGTTGGAGATAGACCAACATGGAGGAATCCCCAGCACCCATGGCGAGTAGACTCAAGGTTCAAGCTCAAAGGAGTTCCTACATTGATCAGCTGGGAGAATGATGCCGTCAAAGGTCGCCTTGAGGACTACGAAGCTCACCTTGAACACAAGATCAATGCCCTTGTTTCTGGGAATTAACTTGGCATTTTTCCAGCTTATGAGATGGTTGGAAATCCTATAATTCTTACTAGGACTATCTGAACATTTACCCAATCAAGTGTAGCTTGTTCATCTTGCACCTTGAGCTTCCAAAAAGTTTTGAAAACCTATTAAAATAAAGTGGGGGGCCCCAAACGCAAAAAAAAAAAAAAAAAA


gi|73934931|gb|DT518241.1|DT518241 WS02436.B21_J13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02436_J1 

AAAGTGAATTCCGGGAAACAA
|||.|||||||||||| | ||
TTTTACTTAAGGCCCTGTCTT

EST sequence (targeted fragment marked with yellow):
TGAAGTTCAAAATCAGACTGGTTTAAGGCCTTGTTTCAATATTTCTGGCGAGAAATCAGTTTCTGTCCCGGAATTCATTTTTCACTTNAAGGGTGGTGCTAAGATGGCATTACCTTTGGCAAATTATTTTTCATTTGTTGATTCTGGAGTTATATGCTTGACAATTGTGAGTGACAATATGAGTGGTTCGGGAATTGGAGGTGGACCGGCAATTATTTTGGGGAATTATCAGCAGAGGAACTTTCATGTAGAGTTTGATTTGAAGAATGAGAGATTCGGGTTTAAGCAACAAAATTGTGTATCGTGAATTGGTTCATTTGCCCTATGATATAATATAGTTTGGAAAAGAGAAATAATTAGCATTGACTCATCTTTGCTAGATGTTTAATTCTTAGGTGCATGGTAAGGATGGTGGTGATGGATTGGTATGGATGGTGGTGGCTGCAGCACTGGAAGCACTAGAGGCCGCTGTGATGGTGGTTCCGGTGAAATTGTTAATTGTCGGTCAGCAAGCAACGGTTGGTTGACAAGGTTTACTTTTTCGTACAATCACTGTTACAAAGGTTGAAATTATATAGAAAGAGATTTTGAAGAAAATTGTTCTTATACGGGTTTTCCTTCTTTGTTTTTTTCCCTTTCCTTCTCGTTTTCTCTATGTGGCTGTTCACGCATGGTAGCCGTTATACCTTCGTAGCACTATGGGATATCTCTCCAGCCTAATCTTTTGGTGGTGCGCAAGGCAAATTAATTCGTCCTTTTGTTCAACGGTCACTAATCTATTTTGTATTCATGTAGGAGACATCTGCTCCAGCGCGTGCTTACTGTTGAATTGTCGATGTTCATATTGGTCCGTGCTCCTTTATATGTGTGTCATGAATTGTCAACAACGTATTTCTTTGTCCAAAAAAAAAAAAAAAAAA


gi|73935554|gb|DT518864.1|DT518864 WS02439.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02439_I1 

AAAGTGAATTCCGGGAAACAA
|||||||||||||||||||||
TTTCACTTAAGGCCCTTTGTT

EST sequence (targeted fragment marked with yellow):
CAACTCAACAAGCAATTTCTACACCTGGGTTCTCTAGATTCTTCTCCAAATCGTCCTCTCGTTACATCGTGAAAGTTGGAATTCCAGAGTTTCTAAATGGAATAGGGAAAGGAGTTGAAGCCCATGTGGCCAAGCTTGAATCTGAAATTGGTGACTTTCACAAACTTCATGTTACTCGGACTTTAAAGCTCAAGAAACTAGGCATTCCTTGTCAACAGAGGAAAATGATATTGAAATATGCTCACAAGTATAGGTTGGGGCTGTGGAGGCCTAGAGCTGAACCTGTGAAAGCCAAATAAATCTCGGAATCATCTGTCATTTGGAGGATTACAAGGTGTTTGTCGTTAACATTCTTGCATGCAATTACGGTTGCAAAGAGTTTAGGTTTCATGAAGGCCATGTTTGTTTCCCGGAATTCACTTTTCGGGAAACCACTTTCCAAACTTTCCTGTGTTTATTTGCTATTAGGAAAGTTGGTCAACGGAAAACACTTTCCAGTCAACGGAAACACTTTTTGAATTTGGTTTGGTTTTCAGGAAAGTGTTTTTCCTTTTGGCTGTGTTTGTTTTCCGGAAAGTGATTTCCGGGAAACCACTTTCCAAACTTTCCTGTGTTTGTTTACCAGTAGAAAAGTTGGTCAACGGAAAACACTTTCCAGTCAAAGGAAAATTTGGCTTGGTTTTCAGGAAAGTGTTTTCCTGAAAAGGGGGAAAAAAAAAAAAAAAAAA


gi|46837104|gb|CN518735.1|CN518735 GQ0102.B3_C05 GQ010 Populus trichocarpa x Populus deltoides cDNA clone GQ0102_C05 5', mRNA se 

AAAGTGAATTCCGGGAAACAA
 |||| |||||| .|||||||
GTTCAATTAAGGGTCTTTGTT

EST sequence (targeted fragment marked with yellow):
TTTTGAGAAACTGAGAAAGAAAAAATGACAGTACAGTTGGTGGATGCAACCATTTCAAGCTTTGGCAGTGTGTTTGAGAAATTCAAAGCAGAAGCACCCAAAAACAAAGTTAATCTCATCCTTTTCCTGGCTGATAATGACCCTTCTACCAATCTCAGTTGGTGCCCTGATTGTGTGAGAGCTGAACCTGTAATATTGAAGAAGTTGGAAGCATTGCCAGATGATGTGGCACTTCTGCGAGCTTATGTTGGAGATAGACCAACATGGAGGAATCCCCAGCACCCATGGCGAGTAGACTCAAGGTTCAAGCTCAAAGGAGTTCCTACATTGATCAGCTGGGAGAATGATGCCGTCAAAGGTCGCCTTGAGGACTACGAAGCTCACCTTGAACACAAGATCAATGCCCTTGTTTCTGGGAATTAACTTGGCATTTTTTCAGCTTATGAGATGGTTGGAAATCCTATGATTCTTACTAGGACTATCTGGACATTTACCCAATCAAGTGTAGCTTGTTCATCTTGCACCTTGAGCTTTCAAGTCTTTGTGAAAACCTATTAAAATAAAGTGCAGCTAATCAAGCCCAAAAAGACATTAATAGCTTCTTGATGATATTANNNNCCGAGAAGTTGNNCAGNNGNAATCAAGAATGTCTTCTTTTTCTTTT


gi|73930185|gb|DT513495.1|DT513495 WS02422.B21_D09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02422_D0 

AAAGTGAATTCCGGGAAACAA
||||.|||.|| .| ||||||
TTTCGCTTGAGATCGTTTGTT

EST sequence (targeted fragment marked with yellow):
ACTCGACTGTTGGAGTTTTTGATGGATACCTTTTCCAAATATTATGTGGAGTAGCTTTGACATGTCCTTTTCAGGGATTGGTACGTGATTTTGTCTTCAAAATTCTTATCAATTTGGTGCACTTCACTTTGGTTAGTGGGATCTCTGTAGTTTGGCTGAAGTCCTGCTAAAGTGGTTGCTTATGTGGTAATAGCTGTGGTTACTGAATTTTATCTCTTGGCCTTGGTTTGTATCAAGATTGCTTTTGATTGCAAGGGATGATACCAGTTTGTTAGTCAAGCAAAAGTGTCAAGTCATTTATGCAAAACATGTTTCCTCACCAGATGGTTATATGACTCTTGGAATCTGTTGGTATCTCCCGCGTTGTGAGTGTTGGAAATGAAGCTGTTGGGGTCAAAATTGCTGATTGTCCATGGCTGCTGCATGATGTGTTTTGTGTGATAATCTTGATGCATATGCTTGGTTTGCAGTGTGCTTGAAATTTGGTTCTGTTCGGATTGTGGTGATGCCACCATTTATTTGTCCAAGTGTGATTAGGGGGCGAGCTAGAGTTTGAAGAATTATGCAGCTCCGTATTATTTCAAGGGCACTTTGCAGGGTTTTATTTTATTGCTTCATTGTTACTTGGGCTGGATTGATTTCATTTCTTCTATTATGGGTCTTTGGTTGTTTGCTAGAGTTCGCTTTTCTATGCATGCTGCTCTGTGTGTGGTTGTAAGCATGTAAAAAAAAAAAAAAAAAA