miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAAGTGAATTCCGGGAAAGTGTTTT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52498170|gb|CV245195.1|CV245195 WS0256.B21_L20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_L20 3', mRNA sequence 

AAAGTGAATTCCGGGAAAGTGTTTT
||||||||||||||||||||.||||
TTTCACTTAAGGCCCTTTCATAAAA

EST sequence (targeted fragment marked with yellow):
GACACTAGAAAGTGTTTTCCAACTTATTTTTCATTACACTAACAAACATCGAAAAATACTTTCCCGGAATTCACTTTTCTGGAATTCACTTTCCCCGGAATTCACTTTCCAAAAAGAAACTACTTTCCAGCAAACAAACGGAGCCTTAATTGGCCTCATACTAACGACTACGGATAACACAGCGACGTTGGCATCTCATTACAAATTAAACCTCTTAGATGATAGGGAACGGCTCAACGAAGATAATGAAGAGACAAAAGTGGCATTGGTAGAAAGCTTCAAACATCAGGGGATTGAGGAGGCAAAAGCTCTTCACAGCCACAGATATGATACAGGACAATTCCTTGCATTTATCAAAACCGACCACAGATATGACACACTAGCAGTTCAAAAAACAGGACAAGCAAACAGATCCAAAGACAAAGAAAATGCCTCCGGAAGATAACTCAGGACGGAAGACAGAGAAACTCGATAGGAAAACCCTATGGAGAAACTCCTAAAAAAAGTTTAATATTGCGCAGCTATGACTCAAAACGCTTCCATTTTAAAAGGAAGGCGATCTTAAGGGCGGCGCTTGATAGAAAGAGAGATATTTCGAAAAGATGGAGTAAAAACC


gi|52498170|gb|CV245195.1|CV245195 WS0256.B21_L20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_L20 3', mRNA sequence 

AAAGTGAATTCCGGGAAAGTGTTTT
||||||||||||.|.||||||  ||
TTTCACTTAAGGTCTTTTCACTTAA

EST sequence (targeted fragment marked with yellow):
GACACTAGAAAGTGTTTTCCAACTTATTTTTCATTACACTAACAAACATCGAAAAATACTTTCCCGGAATTCACTTTTCTGGAATTCACTTTCCCCGGAATTCACTTTCCAAAAAGAAACTACTTTCCAGCAAACAAACGGAGCCTTAATTGGCCTCATACTAACGACTACGGATAACACAGCGACGTTGGCATCTCATTACAAATTAAACCTCTTAGATGATAGGGAACGGCTCAACGAAGATAATGAAGAGACAAAAGTGGCATTGGTAGAAAGCTTCAAACATCAGGGGATTGAGGAGGCAAAAGCTCTTCACAGCCACAGATATGATACAGGACAATTCCTTGCATTTATCAAAACCGACCACAGATATGACACACTAGCAGTTCAAAAAACAGGACAAGCAAACAGATCCAAAGACAAAGAAAATGCCTCCGGAAGATAACTCAGGACGGAAGACAGAGAAACTCGATAGGAAAACCCTATGGAGAAACTCCTAAAAAAAGTTTAATATTGCGCAGCTATGACTCAAAACGCTTCCATTTTAAAAGGAAGGCGATCTTAAGGGCGGCGCTTGATAGAAAGAGAGATATTTCGAAAAGATGGAGTAAAAACC