| mature miRNA: AAATGCTTGAGTCCTGTTGTT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7566775|gb|AW692039.1|AW692039 NF046H06ST1F1000 Developing stem Medicago truncatula cDNA clone NF046H06ST 5', mRNA sequence AAATGCTTGAGTCCTGTTGTT EST sequence (targeted fragment marked with yellow): ATTTGGTATGGATAACATATGCAGGTAGTAATGCCCCAGAGTGAAGTGATTATTCTCACGGATCCAGTTTCTGACCTTTCAGTGCACAGAAATAGAGTCTCTCTGTATCCCATACAAGGTGAATATTCAAGAGACAAGTTGATGCTCCAAAGGATCAGGTCTTATATTACCTTTTTAGAAACAAGACTTCAGAAGCTTTCTCAGAATCCGAAGGATATCACTCATTACATCTTCACTGATTCTGATATAGCAGTGGTTGATGATTTAGGGCAGATTTTTCGTGACCATCCTAATTTTCATATGGCTCTGACCTTCAGGAACAACAAGGCTCAACCATTGAATTCAGGATTCATTGCAGTAAAGGGCACCCCTGATGGAATTTTAAGGGCGAAGCTTTTCCTACAAGAGGTTTTGAAAGTTTATGTCTCAAAGTACATGAGTGCTTCCCGCATGCTGGGTGATCAGTTAGCTCTTGCTTGGGTTGTGAAGTCAAAACCTCAATTTGATGCCAGCAGGTTTGCCAAAACAGTAGCTTTCTCTGATGACATTGGTGGTACTTCAATATTGTTCTTACCGTGTGCCCTATACAACTGGACTCCCGCCTGAGGGTGCTGGTCAATTTCATGGAATGCCATTGGATGTTAAGGTTGTTCATTTTA | |||||||||
gi|148765652|gb|ES612346.1|ES612346 MTGland_A019_2007-05-07/MTGlandA019_B02_007_1 Medicago truncatula A17 glandular trichome Med AAATGCTTGAGTCCTGTTGTT EST sequence (targeted fragment marked with yellow): GNNNNNNNNNTTACGGCCGGGCGGGTGGNNCGACGTTCATGCGCAATTCAACGACGGAGAACCTCAGAGGTTGAAGGTTCGGTGCCTTGGTGTAATGTTAAGAGGTCTCAAGGATCAACTAACTGAATTCAACAAAGGAATCAACCCCGGAGACACAAGGAGGGTGGAACGCCTTCAGTATAAACGTCCAACGCTCGACGAGGGGAGAGTTTCATTCACTTGGGTGGAATTAACAAACGACGAAAATGTGACGAGCATGTTTTGGAGCACAGCATGTTCCAGTGGATTGATATGCGGGTGACGTTATTGAGATCAACTGAAGATATCATCAACAACTTGATTCCGCCARAAGATCGTCATTAGTTAGGGTAAAGTGCATTCCAACTGCAACAATTGTCTTACCTTTGAATGAGATAAATTCAAACCTGCCAAACAACAGGACTCAAGCATTTCACTCGACATTCATGTTTTTCCTTTGAAAAAATTAGATTCTTGTTAGGTTGGTTTATATGAAGGTATAAAGTGTCAAGGAATGAACCTCATTTCTTTTTCNATTGTTAATCGGGAGGACT | |||||||||
gi|9682437|gb|AL382686.1|AL382686 MtBC09D06R1 MtBC Medicago truncatula cDNA clone MtBC09D06 T7, mRNA sequence AAATGCTTGAGTCCTGTTGTT EST sequence (targeted fragment marked with yellow): GAACAGTTCAGTTTTGTAAAACATCAATTAGGGACGGCCTATAGTTACTTGAATACATTTGAAATACTATTGCAGAACGCAGAAGGGCTCGTAGACAACGACGTATATTTGTACAATCCAATTGCCTTGCAGATTGCGGAAGCAGAAGGGCTCAAGCAGTTGGATCATTTGCTCCAGTCTGTCTGGTATGAACCAATTGTCAACAGAATTAAAGTCACATATTTTGGGGAAGAATTTGTAAACTTTGTTGCCAGGAGGCGAGGAATGAAAATAAAAAGAGCAAATTAATGACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|27409686|gb|CA922756.1|CA922756 EST640474 MTUS Medicago truncatula cDNA clone MTUS-57G12, mRNA sequence AAATGCTTGAGTCCTGTTGTT EST sequence (targeted fragment marked with yellow): AGGTTTAAACCTATATTCGATTTTATTCCAAAACAAAACTCCTCTCTAAGATGAACTTGTCTCCAAAGGAACCAAGTAAAAGATTGCTGTGGCAAATCAACTCAACAATAATAAGTTACAATTTATGAACATATATAACTACCATAAATTTTGGTCTCTTCTTTCATGGAGATAACTACGATGCTTTTGGAGATATCCGTCCACAAAGACGCCAGTATGATCTAGGAAGAAACGAAGGCTTCTCAAATATCCATATATCACGAACAAGAACCTCCTTGTTTTTATCTCCAGCAACAACAGAACCTTTTGAGTCATATGCTTCAAATTTTTGTTTAGCCAAAATCTCAAGGGTAATCTGATAAAATACTTTATTCGTGTCACTTTTGTCAACTCCAAGCATACGAGCACGCAGAGTTCGTATCAAAACAACAGGCTCAACCATTTCCCAATAAACCCTGCTCCATGTAGTTTCTCTTACTTTAATTTCATTCTTAAGTGTGGAAAACATCTTCTCAGTAACTGCTTTCCTTAATGAGTGTTTGTCACCATTAGCTATAAGTGTGTTTATCTGCTTGTACATACTGATAGCCTCTAGATAGAACTGTTTCTTTGAATATCCTGTTTTTCTTAACCTTGCAATGGTATAGGCATTTTTGACCTCCATCATTAAGTCGCTTTTCGTTCTTTCCCAACCACTTCTAGTGAACATCCTTTTCCAAAATGGGATTTTCTCACGAGGTTC | |||||||||