| mature miRNA: AACAGCTCTCTGACCCTCGT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24069271|gb|BU877747.1|BU877747 V038bG04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence AACAGCTCTCTGACCCTCGT EST sequence (targeted fragment marked with yellow): TTTTTCTCTCTTGCTGCACAAAACCCAAGCTTCTGCGGGTTAGTTTCTCCAGAGGAGGAAATCATGGCGACGAACACAGCATCGCCAGCTCCACCACGGGAGCTGTCGCAGAAAGAAGCCGACATTCAAATGATGTTGGCTGCTGAAGTCCACCTCGGCACCAAGAACTGTAATTTCCAAATGGAACGTTACGTGGTCGAGCGCCGCAACGACCGAATTTACATGATCAACCTTGGGAAGACATGGGATAAACTTCTATTGGCTGCCAGGGTTATTGTTGCCATTGAAAACCCACAAGACATTATTGCTCAGTCAGCTAGGCCCTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAATGCACTGGTGCTAATGCTATTGCTGGAAGGCATACTCCTGGTACATTTACAAATCAGCTGCAAACTACCTTCTGTGA | |||||||||
gi|38598496|gb|CK114171.1|CK114171 V038G04 Populus male catkins cDNA library Populus trichocarpa cDNA clone V038G04 5', mRNA seq AACAGCTCTCTGACCCTCGT EST sequence (targeted fragment marked with yellow): CGGCCGGGGAACGCCAACGACCTTCCATTTTTTCTCTCTTGCTGCACAAAACCCAAGCTTCTGCGGGTTAGTTTCTCCAGAGGAGGAAATCATGGCGACGAACACAGCATCGCCAGCTCCACCACGGGAGCTGTCGCAGAAAGAAGCCGACATTCAAATGATGTTGGCTGCTGAAGTCCACCTCGGCACCAAGAACTGTAATTTCCAAATGGAACGTTACTTTTTCAAGCGCCGCAACGACGGAATTTACATGATCAACCTTGGGAAGACATGGGATAAACTTCTATTGGCTGCCAGGGTTATTGTTGCCATTGAAAACCCACAAGACATTATTGCTCAGTCAGCTAAGCCCTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAATGCACTGGTGCTAATGCTATTGCTGGAAGGCATACTCCTGGTACATTTACAAA | |||||||||