| mature miRNA: AACCGAATCGAAACCGGTCG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73890543|gb|DT493281.1|DT493281 WS02553.C21_O16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_O16 3', mRNA sequence AACCGAATCGAAACCGGTCG EST sequence (targeted fragment marked with yellow): TGCATTCTGTTAGAGATATTGCAAGCAGTGCGTTGCCTAAAGGGGCAATGGAGAAATTGAAGAAAAGCAAACATGGGATGCGATATGGGGAAGTTTCTCTTGCTGCAGCAATGACGCGTGTCAAGCTTGCAGCTTCACTTGGAGCTTCTTTAGTTTGGGTTTCTGGTGGATTAAGTTTGGTTCAATCTTTGATTAATGAAACCTTACCCTCTTGGTTTATATCAGTCCATGGGTCGGAGCAGGAAGGTGGAGAATCTGGAGGTATGGTTGAAATGCTAAGGGGTTTTGCACTTGCATACTTTGCAATGTTTTGTGGGACATTTGCATGGGGTGTGGACTCAGAATCAGCAGCATCAAAAAAAACGGCCAAAGGTGCTCAGGACCCACTTAGAATATCTGGCAAGTGCTCTAGAGGGGAAAATATCGCTTGGTTGTGATTGGGCTACTGCATGGGCGTATGCATCCGGGTTTGTGTGCTTGATGGTGGCTTGCACACCAAAATGGGTGCTTGAGGTTGATGTGGATGTATTGAAGAGGGTGAGCAAGGGGCTGAGACAATGGAATGAGGAAGAACTGGCTGTGGCCTTGCTGGGACTAGGTGGAGTTGGTACAATGGGCGCAGCAGCTGAACTGATTATTGAAACCGGATTGTAAATTTTGCCGAAAGCATAAAAGCTTGAATGCTAGTTAGAACTTATTTTTGGGATCCTTCTCTGGTAGAGCCAGGTGGGTGCTACTGGGTTCGGTTCGGTTTAGTTCGGTCCTAGAGAAGAATATTTAAAGCTACTAACATCTTTGGTTTTGTTTCTCAGTATAAAAAGCTCTTTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73880525|gb|DT483263.1|DT483263 WS02522.B21_B20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B20 3', mRNA sequence AACCGAATCGAAACCGGTCG EST sequence (targeted fragment marked with yellow): GCTAATCTTCCAATCTTCATTCTTCAATTTCCACTCAAGATCTAGCATCCCAGGCTTCCCAGCAACACCCCCCCCCCCCCATTTTTCAATCTTCATTCTTCAATTTCCACACTAGATCTAGCATCCTAGGCTTCCCAACAACACCTAAAAGCCTTAGCACCAGCCAGCTCTTCTGATTTATTTACATTCCAGGAAATTCATACGTTCCGTGGACAGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCCATTCTAATCCATTCAGCCTTGTCATGGCTGGTCACAGTTAGGATTCAAAAAGGTGGGTAGAGATAAAGGCGTGTCAAGCAAGTGAAGTGAGCCGAGGAAAGGCAGTGAAGGTTCGACTTTGTTCGGGTGGGTGAAAGCCCTAGGTTGCGTAAAGAAAGGATAATAGAGCAATCCATCTAAGCACTTTTTTTCAGTCCAGAAAGCCAAAAAAACAATATAGATTTTTTTTTGACATAAAAAACCGAACCGAACCAAAACTAATCGGTTGGAACCGGTTTCGGTTCGGTTTTGATTGTTTTTTTTATTTCGATGTTGGTTATTTTTATTTGTAAAAATCAAATCGAATAAAAATATCACCCCTAAACCGTTAAAAAAAAAAAAAAAAAA | |||||||||