| mature miRNA: AACCGCTGCCTCCAGTGTCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73889463|gb|DT492201.1|DT492201 WS02549.C21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O22 3', mRNA sequence AACCGCTGCCTCCAGTGTCT EST sequence (targeted fragment marked with yellow): AAAACCTGGTTGGGAGCACTTGCAGGAAGCCCTGATCTCAATAGATCCTATTCGTGCCAGGGACGATCCTATTGTTGTGAAAAATGTCCCATACTACAAAGCCAAGAAGGCATTGGAGGCAGAGGTCATGAAACTTGATCCACCATCTCGGCCACAGAATTGGGGCGAGCTGGATCTTCCACTAAATGTATCATCATGGAGCGAGGAGGATCTTAAAAAACCAGAAAAATTCTATGAGATGACTGTTCTTCTTAATGCACAAAGAGAAATTGCTGATAAAATTTTGGATGCACAATGGGAAACTAAATGGCGTCAAGAAAAGTTGAACGAACTGTTGGAAGAGAAGGTGCGGCCATACATTCAGAACATCAACAGTGGTGCCCTTCCCCGTCCTATCATAATACAACCACAGAATCAGGATAAAAAGAGGAGGCAGAGGAGATGGTGGTTTTTCTGAAGAAGTTTTAACCAGCATTCCCATGTAGGTGGGTGGCTCATTTCATAAGTTGTATTTGCCAAGTTTTTTCTTTCAAAATTGTACATTTTTCTCTCCTACCCTACCTAAGTCTCTCTGAGAATTTTGTAGCTGTATCCTTGGATCAGTCTTAACTTCTACCCTTATCCTAGATATTCTGTAGCTACCATATGCTACTCTATGTCTGTTTTTGTTCTCTTAGAGTCGGTCTTGATTGAATGCAATATATCTCAATATTTTAAGGGACAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCG | |||||||||
gi|73879137|gb|DT481875.1|DT481875 WS02533.BR_D12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_D12 5', mRNA sequence AACCGCTGCCTCCAGTGTCT EST sequence (targeted fragment marked with yellow): GTCGAGTTTTTTTTTTTTTTTTTTGCTGAGTATTTTCTTCGATACAAACTGATTGTTATTCGTTTAATAGCCAAGATATTCCGCCATTAAACTGATGACGGATTCGAAACGGCAATTATAAGAAAAATAATTCGTGTTTTATGCTGAGAGGCATGATTAATTGTATCGAAAGTGAAATATAATTCGAGAATAATTTGATTCGATTCCTGAACTGCTTTCATCACGTTGTCTTTGCGAATAGTTAAGTTTAATTCGCGTTAAATCGATTGCGGTCATCGTTCTTTAAGGAGAAATTAATACAATTTTGTGATAAAAATGACTGTGGAAGTTGCACACCATGATAGCATTGTTGACAGCAATGGAAAAATCCCAACAACATTGACTGAAGCACCAACAACGCCATTAACACCCGCTAAAGAAAATATTTTCGTTTCAATCATACAAACTATTTATGATGTAATCGTATTCTTAGGCATTTCCATTGGATACATTCTTCAAGATCTATTCTACAAAGTGTTCGGCTTTCCCGAACAGGTAATCAAAGGTGAATTAGCTCTAGTTACTGGAGGCGGTGGTGGACTTGGCCGTTTATTAGCATTGCGTTTATCCAAATTGGGAGTTGACATAGTCATTTGGGACATCAATCAAGAAGGTATCGATGAAACAATTGAATTAATTCGGGCCAACGGCGGAACATGTGTTGGTTACAAGGTCGACATTTCGAAAAAAGAAGAAGTTTACATAGCAGCTGATGCCATTCGACGAGATGTTGGTGATATTACAATGCTCATAAACAAT | |||||||||
gi|52497292|gb|CV244317.1|CV244317 WS0254.B21_F06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0254_F06 3', mRNA sequence AACCGCTGCCTCCAGTGTCT EST sequence (targeted fragment marked with yellow): GCCACAGTCTAAACCTAAACCCTTCTACTAGCATACTCAGTTTTGTTTTCTGTTGCTCCGTCGAAATTCAATCATATCAGCCATAGTCATATGTGTTCCCAAGAAGGCATTATATGAGTCCGTACAGCAACTTAGAGAGATTGGAGGCAGCGGAGTTTTAATTTCTCCTTTAACATACATTTTCGAGGAAGTGACACCAAGATGGCAGGAGCTTCTTTTAAAACTCGATTTATAAACACGCTGCAGCTAATGCTTCGGTTGATGTTTTAGCGTTCTTCTGATTTTTGAGAAACTTTTGCTTTCCTCCTTCAATCTCAACGGTGTAGAATGTCTAATGAATGGCTATTGGTGTTGTATAATGATGCAGTTCAAATTTTGCGTCGGTTGAAATTTGCATGCTTGTGCCATAACTCCTGCATTCTTCTTATAGTATTATGTCAAATGAAGTTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52381773|gb|CV229370.1|CV229370 WS01913.B21_B11 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01913_B11 3', mRNA sequence AACCGCTGCCTCCAGTGTCT EST sequence (targeted fragment marked with yellow): GGTTGTGTTGGAGAGCCAGGCTGTTCTTGTTGCTACGAGAAAATCATTGATCCAACGGGAAGATGTGAGGGGCATAACGAAAGAGATTCTTGAAAGGTTTGAGGCGCATTTGAGGGCAGGTGGTCAGTTCACGGTGACTGCAAACATGAGAGGAAGTAGCACAGAAGAAGTGGCTGCTCGAGTACTGAGCCAACCATCTTTGTCTGGGTTGCAGGGACCTACTGTAAGTCCAGTTTTCTGCAAACGTGATGGAGAGGTTGTGTCAGATTTCTATGCCATAGTCATATGTGTTCCCAAAAAGGCATTATATGAGTCCGTACAGCAACTTAGAGAGATTGGAGGCAGCGGAGTTTTAATTTCTCCTTTAACGTACATTTTCGAGGAAGTGACACCAAGATGGCAGGACCTTCTTTTAAAACTCGAGTTATAAATACGCTGCAGCTAATGCTTCGATTGATGTTTTAGCGTTCATCAGATTTTTGAGAAACTTTTGGATTCCTCCTTCAATCTCAACGGTGTTAGAATGTCAAAGGAATGGTCATTGTGTTGTATAATGATGCAGTTCAAATTTTGTTTCGGTTGAAATTTGCATGATTGTGCCATAACTCCTGCATTCTTCTTATAGTATTATGTCAATTGAAGTTTATTTGTGAACTTTTTTTTAATTTAGTTGGCAGTTGACAGTTTTTATAAAAAAAAAAAAAAAAAA | |||||||||