| mature miRNA: AACCGGTTTTGGTTCGGTTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73891558|gb|DT494296.1|DT494296 WS01118.BR.1_A03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01118_A03 5', mRNA sequence AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): GAGAAACCGAAACAACACCGGTTGCTGACGCATTAGCCAATTCTATCTTTTTAAAGAACAAAGTCTAAATGCTTTTTTAGAGAGAGAAAAGCTAAGAAAAGATTGTGAATTTGGAGGCTATATCCATCTGGGCACTCCCTTCGGTTTGATCCGGGTAAAAGATGAGTACACTCGATGCAACTAGAGCAGAACTGGCTCTTGTAGTTCTGTATCTGAATAAGGCTGAAGCCAGGGACAAGATTTGTAGGGCAATTCAATATGGTTCAAAATTTTTGAGTGACGGACAAGCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTAGCTCGGAAAGTTTTCCGTCTTTTTAAGTTTGTCAACGATCTGCACGGTCTTATTAGTCCAGTTCCTCAAGGGACCCCCTTGCCTCTTGTTTTATTGGGAAAGTCTAAAAATGCGTTGTTGTCAACTTTCTTGTTTCTTGATCAAATTGTTTGGCTGGGTAGAAGTGGAATTTACAAGAACAAAGAACGTGTTGAGCTAATTGGCCGGATTTCCCTTTTCTGTTGGATGGGATCCTCAATTTGTACTACTTTGGTTGAGGTTGGGGAGCTTGGGAGGCTTTCTGCGTCAATGAAGAAGTTGGAGAAGGAGCTTAAGGAGGGTGAAAAAAATCATAATGAGCAATATCGTGCTAAACTTAAAAAATCAAATGAAAGGTCACTAGCCCTTGTCAAATCAGCCATGGACATTGTAGTTGCTGTTGGGCTACTTCAATTGGCACCCAAGAAAGTCACTCCTCGAGTTACAGGAGGTTTTGGGTTGGTTAG | |||||||||
gi|73885907|gb|DT488645.1|DT488645 WS02537.B21_A08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_A08 3', mRNA sequence AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): GTTCTTAACCAGTAGCCGAAGGCGCACACACAAACAACTACCGAAAGGAAAGAGAGGACGGACAATGAGTTTAACAATCCACTCTTTCTATTCACTCTAGCTAGGCTTTCATCTGATACTTCAACTGGGGAGGAGAGGAAAATCAGTTTTTTCGATACGATCTCCCTGTCTTGCTGCACCAACACAGAGGGAAACTTCAGAACGGGACAGTGGGCTTCGCCAAATCCTGATTTTGTTTTCCTGCTTCCGGTCATTGAAAGCTCAAAGCTACTGGTTCTGTTCTGTCATGCTCTATTCTAGTTCTTTCAACTCTCAAGTTACCTTTCAAGCAGACTCAGAAGAAAAAGAGGAAGCCCACGAAGCGGTAGCAGCTACTTCTTCTGCTTCGTCTTGAAGCTAGAATCAATCCCTAGATTTCATACTTTTCAGGGAGAAAGTTGTGTATTTTGGCTTGTACAGAAACGACATCATTTCATAGATTTTCAAGCTAGCGAACCGAACCGACCGGTTTGGAAGGAAAAAAACCGAACCGAATCAAAACTGGTCGGTTTGAACCGGTTTTCGGTTCGGTTAAAAAATTTGAAAAAAAAATAATTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886122|gb|DT488860.1|DT488860 WS02537.B21_K08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_K08 3', mRNA sequence AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): GGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTCTGGGGGGGTATCAATTGAGGAAAAGAATGAAACACTTGTAACAACTCGGAACAGCCTGGAACTTCTTTCTAGTATTTTGAATGCTGAAACTGAGCCAAAACCCGTTAAGGATGATCTTACAGTAAGCTTGGTGGACAAGTGCAAGCAGTCACAGCCTGTCATTCAGAGGATCATAGAGAGCACCACTGATGACGAGGCAATGCTTTTTGAGGCCCTGAATCTCCATGATGAGCTCCAACAAGTCATTCTCCGATACAACGAGTTGGAAGCTGGTATAAAATCCAGAGAGCACCTGCCTGAAAGTTCCAGTAACACCGGGGCCAATATATTGCCTGCTCAAGTTGAACCTCATAATGAAACCAAGATAGCAGATACTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGTCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTATACTTATCTCCCTCGTACTTTACCAGCTGGGAATGATTTCTGGGTTTTGCATTCCTGTGTATTACAAAAAAATCATGTCAGATTATTGCCACGAGCTTGTTTTTTTCTCTGCCATTTTATTTAATTCGGTGTTTTTTTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|60702477|gb|DN492287.1|DN492287 V063A03.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V063A03 3', mRNA AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): CCATATTACCCATTGTTGTTAATAGGGGGAAGGCCGTTTTGATAAGGGAAGCTTGACAGAGATTTGGCAAGAGATCAAGTGGTTAATTAAGACCCTCTTCTTGGTCAAGCTCAATCAAAGTCGGTTGCCGCATGCATAAATATTTCCTGTCAAAATTGGGTATAATTAAGTAACCTAAGCTTGGCGTTTTCTTTTGTTTTCTTTACTGCTACTTCAAGTTTGAAGTCTCAACTAGGCCATGTGAAATGCTTAATCACTATATAGGCCTGTGGCAT | |||||||||
gi|73886555|gb|DT489293.1|DT489293 WS02538.B21_N06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N06 3', mRNA sequence AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): GTGATCTTACAGTTGGAGATGGAAGTTCATTCCCCATGCAATATTCGTTGGAGTCGTTTGTTCACCAGGATCCATTGTCTCCTCCTGAAAGCTATCCTATTCCTGACACGGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTCTGGGGGGGTATCAATTGAGGAAAAGAATGAAACACTTGTAACAACTCGGAACAGCCTGGAACTTCTTTCTAGTATTTTGAATGCTGAAACTGAGCCAAAACCCGTTAAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCCCCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAAAGCACAGTATGCAGGGTTTGTGAAAATGCACGTTGCAGGTGTACTTTCTTTAATCCTCGATTCCTTGTATGCTAATAAGTTGTCCTTTCCTGCTATGTAGTGATACATCGATAATCAGGCTGTTTTTATTAGTTAAGAGATTTTACGTAATTAAGTTGGTTATACTTATCTCCCTCGTACTTTACCAGCTGGGAATGATTTCTGGGTTTTGCATTCCTGTGTATTACAAAAAAATCATGTCAGATTATTGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|3857628|gb|AI166343.1|AI166343 xylem.est.185 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): AAATACTCTTATAGTAGTATATACATACATAGTATCTGGTATTCTCGGACCTTCGGTTCCTAGGCTTAACAAATGGCCAATTTGAAGTGCTTGGCAGTTCTTGGTCTCCTCGTTGCATCTTTTGCTGTGAGTGAAAGCCGGGTCGCTAAACAAGACTTGGGCTTGGACCTTGGAGGCTTAGGGATTGGTTTGGGTGTTGGATTGGGTATTGGGCTGGGAGGTGGTGGATCAGGTTCTGGTGCTGGAACAGGTTCGGGTTCGGGTTCCAAACCTGGGTCTANCTCAATTTCCATTTCATCCTCTTCTTCGTCAANCTCTANTTCTGGGTCCGGANGCGGTTCTGGTGCCGGGTCAAAACCGGTTCGTCTGCTGGTTCTAGGGCCGGGTCAGGAACTGGTTCCTCT | |||||||||
gi|18005331|gb|BI121356.1|BI121356 F035P07Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence AACCGGTTTTGGTTCGGTTT EST sequence (targeted fragment marked with yellow): GGAGATAGGAAGTTCATATCCCCATGCAATATATCGTATAGGAGTCGTATATGTATCACCAGGATCCATATGTCTCCTCCTGAAAGCTATCCTATTCCTAGACACGGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTACTGGGGGGGTATCAATTGAGGAAACAGAATGAAACACTTGTAACAACTCGGAACAGCCTGGAACTTCTTAACTAAGTATTTTGAATGCTAGAAACTGAGCCAAAACCCGTTAAGG | |||||||||