| mature miRNA: AACCTTTAGTCCTGGTTGGCG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21150068|gb|BJ471565.1|BJ471565 BJ471565 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): GGCTAGGCTTTAGTCCCGGTTTACTAGGAACCTCTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGGGTGGTATCAGGGTTTTGTCAGGCTGGGGCCCATGCGAGGGCAATTAGTCCCGGTTGGTAAATACAAATCGGGACTAGAGATAGATCTTCGGTCCCGGTTTATATCACCAACCGGGACTAAAATTATCACTATAAATAGTGCTTCGTCCAGCCCGAGCCCAAGTTCTCTATTTTCTCCTTTCTCTTCTGTGTTCTCTTCCCTTGCTCGAGTTCATCCTCAATTTCTTCCTAGATTTGTGAAGATTTGAGGCACCCCATCCATCCAAGTGTTCACAAAGGTTAGCAACTTTGTCCTTTCATCTCTCATCCCCGTCCTAACCACCATCGATCGCCCTCATTGTCTCGTCGCTGGCACCACCTTGGTGATCCTCTTGTTCTTATCTTTTTATTCCACAAAAATCTTCTTTGGATGATTTAGATAGTTTTCTTACTTGTATGATTGTTTGTTATACATAGTGCCATGGTCTTGATAT | |||||||||
gi|24237153|gb|BU986207.1|BU986207 HF11A03r HF Hordeum vulgare subsp. vulgare cDNA clone HF11A03 5-PRIME, mRNA sequence AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): GGGTCATGGCTCCACCCGGGACTAAAGGGTGTCTTTAGTCCCGGTTCGAGCCCCGAACCGGGACCAAAGATCCTACTATATAAGCGGGAGTTGGAAATTTCCAACCCAAATCGCCATTTCTCTTCTTCCTCGGACTCTCTCCTGCCTGGCGCAGCACAAACTCGCGCAAGGCCGCCAGGCTGCCCGCCGTCCTCCTCGCCGCTGCTTGCCGTCCTCCTCGTCGTCGCCGTCGTCCTCCTCGCTGCCGCCGTCCTCCTTGCCGCCGCCATCCTCCTCGCCGCCGCCTGCCGTCGTCGACGCCCTCCCTTCCCACTCCAGCCGGTAAGCCCCCCGCCCACTCCTCGCCAACGCTCCTGCCGGTAG | |||||||||
gi|60277794|gb|DN182537.1|DN182537 HO20G01S HO Hordeum vulgare cDNA clone HO20G01 5-PRIME, mRNA sequence AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): GCACGAGGCTCATTCTCCTCCACCTCTTGAAGCCATTTCTTGAAATAGGTAAGAAAACGCGACACCATGGCACTGTCATTCGTGTACACGACATTGAGTTCGGTCGTGCCATGTGCGAGCACCTCTCTGTAGCGAGTGGTTGGCATGGTGGAAGAAGTGAAGGGAAGAAGAGAGGGGAAGAAGAGAGGGGAAGAAGAGAGGAGAGCGAGAGAGAAGAAGAAACAGAGAAATGGCGAATCTTCTTTGGTTCACGCTTTTCATCGATCGAAACGATGCGGGAGGCAAACTTTTTGGACCTTTAGTCCCGGGTTGAGCCACCAACCGGGACTAAAGGGGGATACGAACGAGTGCCACCACCGCGGCACGCCACGTGTCAGACCTTTAGTCTCGGGTTGAGCCACCAACCATGACTAAAGGGGGATACAAACGGTTGCCACCACCGCGACACACCACGTGTCAGTCGCTAGATCTTTAGTCCTGGTTTTTGGCATGAATCGGGACTAATGCATCGAACCGAACCACGACTAATGCAT | |||||||||
gi|94337377|gb|BY858944.1|BY858944 BY858944 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet112b05 3', mR AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): ACGTCCTCGGCGCTCTCGCCGAGCAGGGCATCAACCCGGACTACAGGTTGTACAACACGGAGCACATCAAATGGGCGGTGAACCAGAAGCTGGGAGTAATGCCGGGGGTGCAGTGCAGGGACGGGCCGTTCGGCAAGAAGCAGCTCTACCAGATCTACCTCTGCGTCGACAAGGACGGCCAGATCTTCATCGACTGCCCCAAGCTGCCCAAGTTGCACTGCCCCGAGGAGGTCCTCTTCCATCCCTTCCACACCTGGATGCTCAACGCCACATCGCCCGCCAAGATCACGTTGCCCACCGAGGCCTAAGAGCCACCCGCTCGGCCGATGCCTCAACTGAAACTACCTGCTATTGTGGCCTGAACTCTGGACCATTATATTGTGCTATGTTTTTCCTATATGCATGGTTACCTATAATATATATGTAAAAAATAATACGTGAAGTATATGAATAAACAGTTCTATTATGTCTGGTATTTAAG | |||||||||
gi|13187603|gb|BE194735.2|BE194735 HVSMEh0086K24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vu AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): ATAAGTGTCATTTCTGCTTGCAATATTTAGCAGAGGAGATATGGCCATGAGGGCAATTTCGTTGTGCCTAGTCGTCGGCTTACTAGCCGCTGCAGCACCTGCGAGTGCAACCAGCTTTGATTTCTATTACCTCATTCTAAAGTGGCCTGGAGCATACTGCACGGACAGCGATTACGGATGCTGCGTGCCCAAGTACGGCTACCCGGCGGAGGATTTCTTCGTCCAGAGCTTCATGACCTTCGACTTGTCGCTGAACAAAGCCATTGTGAGATGCAATAGCGACAAACCTTTCGACATTAACAAGCTCGAGCCAATCGAGAACAACTTGAACCACTACTGGAGCAACATCCATTGCCCGCGCAATGACGGGACGAGCACCTGGAAGAGCGAATGGCGCAGCTACGGCGTCTGCTCGGGCCTCAAGGAGGTGGACTACTTCAGGGCCGCCCTCAACCTCCGCAAGAACGCCGACGTCCTCGGGGCTCTCGCCGAGCAGGGCATCAACCCGGACTACAGGTTGTATAGCACGGAACGCATCAAGTGGGCGGTGAACCAGAAGCTGGGAGTAATGCCCGGGGTGCAATGCCAGGACGGTCCGTTCTGCAAGAAACAACTCTACCAAATCTACCTTTGCGTTGACAAGACAGCCAGACCTTTATTGACTGGCCCCAACTTCCCAAATTGCACTGCCCCGGGAGGGCCTCTTCCACCCTTTCCAACTGGGTAGCTAAAGGACATTAGTCTGTAAAAATAACCTTTCCACCCGGGCTTAAAACCCCCCCTTTGGACCGGGCCCTAATGAATTTCCCCGCCT | |||||||||
gi|9419483|gb|BE421640.1|BE421640 HWM012cC.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cC.0 AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): TGGGGNCCGCGGGTAATGAGCGGCATTACCCTACTAACGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCATCGGCTGCATCTCGAAAAGAATGCATGCCTTCTCTGTAAGTGGTTGTGCGTCAATCACCGTACATCCATGGATGGCTCATCTGTGTTATACGACAGTATATCAAATACAATCACGATCCTAAAAATTAGTACCGCACGGTCTAAACGAGGAAATATAGTTGCTAACCTTTTAGAATAAGTAGAAATAAAGAGGAAGAGGTTTAAGCGTGGCTCAGGCATCTCATATCGTAGTTGTGTTCGGTGAACTGAAGCGGCATCGCTCTAACACACATTTCAACAAACACCTCTAGTGCATCAAAAAAAGTGGAGAGCAAGCACCCACCCACAATCCTCCATCCAAGAAAAATGCAAGGAAGAGGGGAGAGGGGGGCTGTGCTATATATAGGCAGAGGACTTTAGTCCCGGTTTGAGACACGAACTGGGACTAAAGGTGGCGCACATGCGGGCTGCCCACCGCGTAGCCCTTTAGTCCCGGTTTGGGACACGAACCGGGACTAAAGGCTCCTTACGGGCCGGGACTAAAGCCTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACGCGCGCTCACTGGCCGTCGTTNTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCANNNNNCNNNCNNATNGNNNNNNNNGNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNAANNNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG | |||||||||
gi|94339853|gb|BY836694.1|BY836694 BY836694 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet112b05 5', mR AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): TATTAGCCGCAGCTGCAGCACCTGCCAGTGCAACCAGCTTTGATTTCTATTACCTCATCCTAAAGTGGCCTGGAGCATACTGCACGGACAGCGATTACGGATGCTGCGTGCCCAAGTACGGCTACCCGGCGGAGGATTTCTTCGTCCAGAGCTTCATGACCTTCGACTTGTCGCTGAACAAAGCCATCGTGAGATGCAATAGCGACAAACCTTTCGACGTTAACAAGCTCGAGCCAATCGAGAACAACTTGAACCACTACTGGAGCAACATCCATTGCCCGCGCAACGACGGGACGGGCACCTGGAAGAGCGAGTGGCGCAGCTACGGCGTCTGCTCGGGCCTCAAGGAGGTGGACTACTTCAGGGCCGCCCTCAACCTCCGCAAGAAAGCCGACGTCCTCGGCGCTCTCGCCGAGCAGGGCATCAACCCGGACTACAGGTTGTACAACACGGAGCACATCAAATGGGCGGTGAACCAGAAG | |||||||||
gi|166072613|gb|FD522424.1|FD522424 RUS56A04w HF Hordeum vulgare subsp. vulgare cDNA clone HF02P09, mRNA sequence AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): AAACCATTCAAATTTAAAAAATAATTGCACAAACAGAAACTAGACAAAATTTTGAATCTAATGCAAAAAAGAATCACTCAAAAAAATTAAATATCCTAAAAGATATAAGCAATTTAAAACAGAAACTACAAACAGAAATAAAATTTAAAAACAGGAAAAAATAAAAATACAAAACCCCTTTAGTCCCGGTTCGTGGTCCCGGTTCAAAACACGAACCAGGACTAAAGCCTCCAAACCATTTAGTTCCGGTTCCAGACACGAACCGGGACTAAAGGTCCCTCTTGAACCGGGACTAATGACCGACCGGCACCCTTGCCGTTCGAACCGGGACTAATGCTAACATTAGTCTCGGTTCGTAATGAAACCGAAACTAATGTGTAAATTGAGCTGGGACGGAAGCCCCTTTTTCTACTAGTGGCACTTCTACAAACACGTGGCTGTGGACCACATGTCATCCTCACACTAGAAATCAGGAAACAAGTACTAACTGCAGACACCGGACATTTGTCGTACAAAATACTTCCTTTGTACCTGAATAATTGCAGTTG | |||||||||
gi|217044747|gb|GH210781.1|GH210781 HVSMEa0012N03f2 Hordeum vulgare seedling shoot (cold stress) cDNA library HVSMEa (HVcDNA0001 AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): ATTTCTGCTTGCAATATTTAGCAGAGGAGATATGGCCATGAGGGCAATTTCGTTGTGCCTAGTCGTCGGCTTACTAGCCGCTGCAGCACCTGCGAGTGCAACCAGCTTTGATTTCTATTACCTCATTCTAAAGTGGCCTGGAGCATACTGCACGGACAGCGATTACGGATGCTGCGTGCCCAAGTACGGCTACCCGGCGGAGGATTTCTTCGTCCAGAGCTTCATGACCTTCGACTTGTCGCTGAACAAAGCCATTGTGAGATGCAATAGCGACAAACCTTTCGACATTAACAAGCTCGAGCCAATCGAGAACAACTTGAACCACTACTGGAGCAACATCCATTGCCCGCGCAATGACGGGACGAGCACCTGGAAGAGCGAATGGCGCAGCTACGGCGTCTGCTCGGGCCTCAAGGAGGTGGACTACTTCAGGGCCGCCCTCAACCTCCGCAAGAACGCCGACGTCCTCGGGGCTCTCGCCGAGCAGGGCATCAACCCGGACTACAGGTTGTATAGCACGGAGCGCATCAAGTGGGCGG | |||||||||
gi|94340207|gb|BY836848.1|BY836848 BY836848 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet113h04 5', mR AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): TATTAGCCGCAGCTGCAGCACCTGCCAGTGCAACCAGCTTTGATTTCTATTACCTCATCCTAAAGTGGCCTGGAGCATACTGCACGGACAGCGATTACGGATGCTGCGTGCCCAAGTACGGCTACCCGGCGGAGGATTTCTTCGTCCAGAGCTTCATGACCTTCGACTTGTCGCTGAACAAAGCCATCGTGAGATGCAATAGCGACAAACCTTTCGACGTTAACAAGCTCGAGCCAATCGAGAACAACTTGAACCACTACTGGAGCAACATCCATTGCCCGCGCAACGACGGGACGGGCACCTGGAAGAGCGAGTGGCGCAGCTACGGCGTCTGCTCGGGCCTCAAGGAGGTGGACTACTTCAGGGCCGCCCTCAACCTCCGCAAGAAAGCCGACGTCCTCGGCGCTCTCGCCGAGCAGGGCATCAACCCGGACTACAGGTTGTACAACACGGAGCACATCAAATGGG | |||||||||
gi|217053207|gb|GH219530.1|GH219530 HVSMEh0086K24f2 Hordeum vulgare 5-45 DAP spike cDNA library HVSMEh (HVcDNA0009)2 Hordeum vul AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): ATAAGTGTCATTTCTGCTTGCAATATTTAGCAGAGGAGATATGGCCATGAGGGCAATTTCGTTGTGCCTAGTCGTCGGCTTACTAGCCGCTGCAGCACCTGCGAGTGCAACCAGCTTTGATTTCTATTACCTCATTCTAAAGTGGCCTGGAGCATACTGCACGGACAGCGATTACGGATGCTGCGTGCCCAAGTACGGCTACCCGGCGGAGGATTTCTTCGTCCAGAGCTTCATGACCTTCGACTTGTCGCTGAACAAAGCCATTGTGAGATGCAATAGCGACAAACCTTTCGACATTAACAAGCTCGAGCCAATCGAGAACAACTTGAACCACTACTGGAGCAACATCCATTGCCCGCGCAATGACGGGACGAGCACCTGGAAGAGCGAATGGCGCAGCTACGGCGTCTGCTCGGGCCTCAAGGAGGTGGACTACTTCAGGGCCGCCCTCAACCTCCGCAAGAACGCCGACGTCCTCGGGGCTCTCGCCGAGCAGGGCATCAACCCGGACTACAGGTTGTATAGCACGGAGCGCATCAAGTGGGCGGT | |||||||||
gi|94349949|gb|BY861994.1|BY861994 BY861994 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet40a02 3', mRN AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): GATGGATAGGAGACCACTAGGCATCCTCTTACCTTCTCCTTTCCTCCCTTGTTTCTTCTTTTCCGGTGACTCTCGCCGGAGTTGTTTTCCTTCACTAGTGGGGACGGGGCCTTTAGCCCCGGCCTGTAAGGGGCTTTAGTCCCGGTTCACCAACCGGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTCTTACAATCCGAGACTAAAGGTGCTTCACGTCGGCGCCTCGTAGCGCCCCAGAGGCAGGCCCTTTAGTCTCGGTTCGTTACACGGACCGGGACAAAAGATTTTCAGATTTTGCTGGTTTTTGGGTTTTTTTTTAATGAAATTATTTTTGGGTTTT | |||||||||
gi|9418395|gb|BE420552.1|BE420552 HWM000.B01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM000.B01, AACCTTTAGTCCTGGTTGGCG EST sequence (targeted fragment marked with yellow): CCTCCGCCCGCTCTAGAACTAGTGGATCCCCGGGCTGCAGGAATTCGGCAGAGATCACTCAAAAATATACTTTTAAAATAAAGTTATTCACAAACTAGTGATTCACACAATTTTCAAAGAATTCAAATTTCAACTATTCAAATTTGAGAAGTACTAGCATTAACATAAAGTTTATAATTTTTGTGACCTAAAGCAAAAACCATTCCTTCAAAAACTCTAAACACTCTTACAGTTATTCAAAATCCAAAAACGAAAACCATTTTGTTTAAAAAAACAAAACACAAAAGAGAAAGGCACCTTTAGTCCCGGTCGTGACCACCACCCAAGACTAAAGGTTCCTTCTCCCGCGCGGCATTTGGCCGACGAGAAGGTGGTCCTTTAGTCCAGGTTGGTGGCTCCAGCGAGGAGCAAGAGCCTTTGGTCCTAGTTCGCTGTAACGCCCCGGGCACACCCGCCGGCGGTCGTTACTCCTAGCGGGATCCAGACCTGACCCACATATCAATACTAGTCTTTTCTGCGCACTTTGTCCCCACTCATGCGCACCCGGGATCAACTTCTTCGTCGGTCACTCATCCTAGAACTAGCACAAGCCGAGCACGCCTAACGCGGGAGTTCTGCTCGAATGGGCTCCCGAAAAAGAAGGAATTCCTACCGATACAGCCGTCCACCACCCCCCACACCCTCAGTTCTCATCCACGCCTCAACTCAGAGAATCGAGCCTCCGCCGGGCATCAAAGGGCTCCTCCTCCGGACAACCCTCCCGGACCAACCCAGCAAACCGGAAACGGCCCCCATGACGTGCACAAAGTCACAACAAAACAACGCGCATCCCCCGAAAAACCGCCAAACGGGAGCCGGCTCTCACCCAAACCCCGCACTCTCCGTCCTCCTCCTCGGCCTCACTCCCCGGGATTCAACCAACCCAAACAACATAACCCCCACAAGAACCCCCCACTTCAAGGCACCGGACAACCCCCCACCGCACCACTCAAAAAACACAAGCAACACCCCCATCGGATCCGTCCGAAGGGTCCCGCACAAGAACGCCTCGCTNGGGGTTTTTTTCCCCCTCCCGCCCCATCCGGCCGAACCGGCAAAGTCGGTCCCAACCCCACTCGCGCCACATCCCCGAAACTCAACAAGAACAGAAAAACCCTCGAACGAGCTCCAAACGGCCCCCCCCCCACCCCCCACGGCCCACCCGCCCAGCCACGCAAACAGGCCCCGGGCCTCCC | |||||||||