miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AACTACTCCATCCGTCCCAGA
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|33795848|gb|CF323793.1|CF323793 HDN--04-M15.g1 OsHDAC1-overexpressing transgenic rice lambda phage cDNA library II (HDN) Oryz

AACTACTCCATCCGTCCCAGA
|||||||||||||||||.|
GGGATGAGGTAGGCAGGGTTT

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGGAGGGGGAGAGGACGAGAGGCGGCGGGCGGCGGAGTAGATGGCCGGCGGTGGCGCCGCCGCGTCGGCGCTCTCGACCCCATGGAGGTCGCTGCTGCAGCGAGCGTTGGACGGCAATGCCCACTTGAAGCACTCCACCTTCTTCCAACTCGCCACGGTGGGTGGCGGCGGCAGGCCGGCGAATCGCACCGTCGTATTCAGGTGTCCGCGGGCGTTGCTCCCCTCAAATTTTGTTTTATTTTGCACTGGTTTTGACCCGGGAAATTTTTGGTCATGTTAGGGGGTTCCAGGAGCAATCTGATAAGATTCAGATTAATACGGATGCACGAAGCAATAAGGTGTGCTGCTAATTCATGTGCTTGTGAAATTCGTATCTACAATGTATTGCTGCAGGAGTGTTCCCGCTCACTGATGATCTCCTTGGATGTCTCGATGTGAGTTGTGCTTTGAACAGATTGGTGAGATCAGGAATTGCTCCTTTGGTGAGGTATGATATAGAGATTTGGGACGGATGGAGTAGGGTTCACGAATCACGAAAGAACAATTGCATTATTACAACTGCGAAATGACTACAGATGAATTTCTAACTTT



gi|58603034|gb|CK013562.1|CK013562 30280rsicef_9206.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G

AACTACTCCATCCGTCCCAGA
| |||||||||||||||| |
ATTATGAGGTAGGCAGGGTAT

EST sequence (targeted fragment marked with yellow):
CTGCAGGAATTCGGCACGAGGGGAGAGACTAGTTGAGTTTTTTTTTTTTTTTTTTATGGGACGGATGGAGTATTATTAAGAGAGCATGGAAGCACTGTCACTCTGTCAGCTGCTCTGCTCACGGTAAAACCATTCAGATAGTACTGCATTCTATCAAGGTCAGGATGCCTGTCCAATGGAATTTCTAGATATGCAAGTTTCGAATTCTAAATGTTGTACAGTAAAGGAGTAAACAAATATAGTTATTCCGTAAAAAGATAAATCTATGTTACAAGAATATACAGACTCGAAGCAAAACATCTCCATGCTGCATGATACAGCTGAACTGTATTTGCAGATGCTTGGCAGTCAATCTACCATATCACTTGGGGCCTGAACGCAAAGAATTCCAGCGGAAAGGACCTCTCATACCTCCAATGTGGGGTGGCCCCTGCATGATCAACCCTACACAGACACAGACAGCAGCAATGGCGACCAAGGAGAGTACTGCTGGCCTGGTTGACAGAAACCTGTTCAAATGATGCCGGTAAGCGAGTTCTGGGAGACAC



gi|29656800|gb|CB653075.1|CB653075 OSJNEc03M04.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc03M04 3', mRNA sequence

AACTACTCCATCCGTCCCAGA
||||||||||| ||||| ||
ATGATGAGGTAGACAGGGACT

EST sequence (targeted fragment marked with yellow):
ATTAAGTTGGGTAACGGCAGGGTTTTCCCAGTCACGACGTTGTAAAAAGACGGCCAGTGAGCGCGCGTAATACGACTCACTATAGGGCGAATTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTTGGCACGAGGAGGGCGTTGGACTTGTGCGTGCGCAGGTCCAGGGGCAGGACGACATTCGATGCGGTTGCCGACGAGACAACTCAGGGACAGATGGAGTAGTAGTTGGAGGTCCAATATTATAGCCTAGGACACGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTTGAAATATGCCCTTAGCTGGTGAAGAAAATGTTCCAGGTGTTAATAATGTACAGCTACAAAAGAAGGTTCACAAGAAGACAGCAAAGTCTAACCAGCGAGCAGGCAACCATAAAAAGGGCTAGCAGAGGTGCTGTAAAAAAAATCAAGAACCTACAAGAACCATAAAAGAGATGATTTGTTTTGTTTTTGGGACCTCAATACACCTACAAGAACCTTAGTTACATTTAAATTATGTAATTATTGGTATGTACTTGAACTTTTATGTAATAGGTATTTGAGCTGATGGATAACTGCTATATAGGAATACTGCTACTTGATGGGTGAACAATAGTTACATGATGATATGTCAGAATGCATTTGTGAACAATAGTTATGAATAGTTGAATATTGTGTTATGCATGTGTGAACTTCCTG



gi|88247134|gb|CI246983.1|CI246983 CI246983 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat

AACTACTCCATCCGTCCCAGA
|| |||||||||||| |||.|
TTCATGAGGTAGGCAAGGTTT

EST sequence (targeted fragment marked with yellow):
TTTTAAATTTTTTTTTTTTTTTCCTATAAGCCATATATATCTTTTTTTAAGAAGGGTACAACTTAGGACACACACTTTACACACACCACACTCACACCACGACACACGCACACACAAGCGTGCACGTCCCTAACACACGCTAGGAAAGAGATTGTAGGCACTAGGTCTCAGTGCACGTTGAAAACGTGCAGTCCCACTGAACGTGTACGCGTGTGTATATCTTATTACCTACCCGGGACCTTCCAAAGACAGTCCCGGGGAAAGAGGGGAAAATTCCCCACGGGCGAGGGACGAGTGTCAAGTCTTGAGACTTGAACGCTGGTTAGCACCGAGCGAGCCACTGGCTCCTGCCACCCGCGCTACGTGCAGTCCACATAAGTCATATATATATAGTCATCAACCATAGTACTCCCTCCCTTCCAAATTACTATTAATTAATTTAGAAAAGACAAAATAAAATAGTTATTTGGAACGGATGGAGTACTTTCTTGTTTATGCCCCATGAAAATGGATAGGGACGCTATGTGTATATGCACTGTCATATTATAAAAGACTAAAGATGGACTT



gi|58607851|gb|CK035884.1|CK035884 37149rsiceg_0991.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cD

AACTACTCCATCCGTCCCAGA
| |||||||||||.||||| |
TAGATGAGGTAGGTAGGGTAT

EST sequence (targeted fragment marked with yellow):
GCACGAGGGTGACTATTTACTAATCCTTAATTTGAAAGATCAAGAAATGATTTACATTGTATTGATGCAATGTGTAAAAGCTGAAATAATAATATATACATACACGTCAAGTGCAGAGGGCATGCATATGCCTACTAGCTAGTAGTTTGCGTCATTGATTCTCAAAATTTTCATACAAATATAACCCCTCCGTCTCACATCGATCCCTTCAAAGTTCAAAATCCTTATATTATGGGATGGATGGAGTAGATAGATACTATGTGGTACCAGTGAGCAATGATCAGTTGTGATGTAGACATGCATCTGCATGCCACAGCTAATTACACCCTCGTGTTGATGTAGTCACGTAGATGTCAGCGTTAAATGGATGTTTTGATGTTTTCTGAAGTTGTAGTATAGTACTCCGTAGTAGGTCTAACGTTGCATTCTTAATTAACACTGCATACATATCACTTAAGATATTCCTAGCTTAGCTACCGTCCACATACTTGAGGTTCCTAGCTAGATGACAATACTACGTGCAAGCCATTGCAGGAGCTGAATATCTTGTAGTACTTGCGCATAGTTGCATGGTCCAGAAAAACAGATATCCAGTACATCTCTCGTTTTCTCCCATTAAT



gi|117233187|gb|CT848030.1|CT848030 CT848030 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

AACTACTCCATCCGTCCCAGA
||| |||||||| .||||||
CTGAAGAGGTAGGAGGGGTCT

EST sequence (targeted fragment marked with yellow):
ATGAATGAACCCGCTCCCATGGCGCCCCTCCGAACACTCGTTATCTTCCTCCTCCTCCTCCTCGCGCTCGTCCCGGCACTCTCGCGCCCGGATGGCGGCGGCGGCGGCTTCTATGACCCGGCGCGCGTCACCCAGCTATCCTGGCGCCCCAGGGCGTTCCTGTACAGCGGCTTCCTCTCGCACGACGAGTGCGACCACCTCGTCAATCTGGGGAGGATGGAGAAGTCGATGGTTGCAGACAATGATTCCGGCAAGAGTATCATGAGCCAGGTGCGCACCAGCTCCGGCACCTTCTTATCGAAGCACGAGGACGACATTGTTTCTGGAATTGAAAAGCGTGTAGCTGCTTGGACATTTCTTCCTGAAGAAAACGCCGAGTCAATTCAGATTCTGCATTATGAGCTTGGTCAGAAGTATGATGCCCACTTCGATTATTTCCATGACAAGAACAACCTTAAGCGTGGGGGTCATCGAGTCGCCACTGTGCTTATGTACTTGACCGATGTCAAAAAGGGTGGAGAGACTGTATTTCCAAATGCTGCGGGAAGGCATTTACAACTCAAGGATGAAACTTGGTCTGATTGTGCAAGATCTGGCCTGGCAGTGAAGCCAAAGAAAGGCGATGCGCTACTGTTCTTCAGTCTCCATGTTAACGCGACAACGGATCCAGCCAGTCTTCATGGAAGCTGTCCGGTGATCGAAGGCGAGAAATGGTCTGCAACGAAATGGATCCATGTCAGATCATTTGATAATCCT



gi|29614545|gb|CB619558.1|CB619558 OSIIEa04D04.r OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa04D04 3', mRNA sequence

AACTACTCCATCCGTCCCAGA
| |||||||||||||| |.|
TAGATGAGGTAGGCAGTATTT

EST sequence (targeted fragment marked with yellow):
TGTTCCCCCAACTAAACACACATGTGAGACAGTGTCAAACGACTACCCCCGAGCAGTGGCGTTTTGGCAGTGTGCATCCTACTCCTTTCGTTCTGAAATATAAGAGATTTTAAACGGACGTCTAAATTCGTAGCACTAAAAAGAGTCACATCCATTCAAAATCCTTTATGTTTTATGACGGATGGAGTAGATGATACAGAGACCAAAGATGATTAAACTGATGAGCTATATATATTCTTTGACATGTAGGATTTAGCACGGTGTTCGAGACGTGCTGCGGGTCAGGCGGCGGCAAGTTCAACTACAACAACAACGCGAGGTGTGGGATGTCAGGCGCATCAGCGTGCTCCAACCCGGCGTCGCATCTTAGCTGGGACGGCATCCACCTCACCGAGGCAGCTTACAAGCAGATCACTGACGGCTGGCTCAACGGCCCGTACTGTAGCCCGGCCATCCTCCACAGCTAAGGCAAAATGACTGGAAAGAACGAGCCATTAGTTAATTTATTACTTTATTATTAAGGCTGGTGTTTATTAATTAAGCGGGAATTAATTAAAGGGGAATTGTTTGGGTTCTTGATTTTTATTTGGGTGGCATATATGGTGGGTGGTGTGACGGTGAAATGGTTTACTTGCGTTGCCAAAAAAGCAAAGAAAGCGATGGCATCTGTAGAATAAATGTTGGTTACTGTTGTAATTTGATAATTGTTTCTCTTCCAGAATCAAATGAATCATCAATGGTATTATCCTC



gi|88445690|gb|CI546827.1|CI546827 CI546827 Oryza sativa (japonica cultivar-group) root of seedling 0.1M NaCl for 3 days Oryza s

AACTACTCCATCCGTCCCAGA
| |||||||||||||| |||
GTTATGAGGTAGGCAGGATCT

EST sequence (targeted fragment marked with yellow):
GCTGTTATGATGATGCATGTTACTCCCTTCGTACCAAAATATAACAACTTTTAGCCCTCAGGATTTGTCCCAAAATATAACAACTTCTCCACCAACATTCTCTTCCCAACCAATAACAGCANTCCACCATTCACTTTTTCCACCTACCTCCACTACTCATCCAATTATGACCATCCACCTCTCACTTCTACCTACTTTCTTAATAACCGTGTCCAAGCCTAAAACTTCTTATATTCTAGGACGGATGGAGTATTGTCCTTCAACCATCCTAGAAATAATCCGCATAGCAAAAATCAATCGATTATTAATTATGACTGACCTGGATAACAAAGGTTGATCCAGAAATGGACTTTCCATGTTCAGCCAAAAGAGCCTCAGTAGCGTACATCAC



gi|58673805|gb|CK062491.1|CK062491 61899rsicek_5737.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr

AACTACTCCATCCGTCCCAGA
|| ||||||||||||||||.|
TTCATGAGGTAGGCAGGGTTT

EST sequence (targeted fragment marked with yellow):
CGGCACGAGGGCGGTGGCCACAGCTAGTTTGAATGCTACCAATGTTCATTACATCAAAGCAGATGATCTGATCGGAGATTGGAAGGAGTTTCTCCTTCTAAATCATATTATATCATTTGAGATACTGCATACTATATGTTGGTTCTTGTGCAGATTAAAGCTTCTGGATTTTACACAATCCTCCTACCGTTTACCAGTCAAACCTTTAACATTTTGCTGTGCTCTTTTTGTGAAATTTCAACTTAGTAATAATATTTTGTGATATGCACTCAAACTACATACTCCCTCCGTCCCAAAAAAATCCAACCTAGGATAGGACAACAAATCTGGACAAACACTTTGTCCAGATTCGCTGTGACCTATCCTAGGTTGTTCTTTTTTGGGACGGATGGAGTACTTCTGAAGCGTTCGTCCTTATAGTTCTGTTTCATTGTTTCAGGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGCACTGGCAACAAGCAGGTTGGTTTCCTCACTAACCGTCATGTCGCGGTTGACTTGGACTACCCTAATCAGAAGATGTTTCATCCATTACCACCCAATCTTGGGCCT



gi|218497171|gb|FG955368.1|FG955368 MA_PA64s_03179 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s

AACTACTCCATCCGTCCCAGA
||||||||||| ||||| ||
ATGATGAGGTAGACAGGGACT

EST sequence (targeted fragment marked with yellow):
ATTCCTCTCCCCATCCACGCGCTGCCGGAGTCGACCTCGCGCCCGCCCAGGTGGTGGTGTGTGCCGGGTAGAGGAGGAGGAGGAAGCGAGGGCGTCGGACTTGTGCGTGCGCAGGTCCAGGGGCAGGACGACATTCGACGCGGTCGCCGACGAGACAACTCAGGGACAGATGGAGTAGTAGTTGGAGGTCCAATATTATAGCCTAGGACACGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTCGAAATATGCCCTTAGCTGGTGAAGAAAATGTTCCAGGTGTTAATAATGTACAGCTACGAAAGAAGGTACACAAGAAGACAGCCAAGACTA



gi|86903056|gb|CI324526.1|CI324526 CI324526 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

AACTACTCCATCCGTCCCAGA
||||||.||||| .| |||||
TTGATGGGGTAGATATGGTCT

EST sequence (targeted fragment marked with yellow):
CAAATAGAAATAATGAATTTGCAATATCAGAAAAGACGAGATGAGTTACAAACTACTCACAAAGTTGGTAAGGAAGTGCACACGATGCAACATCAGCAATTGCAAAATACCACTCACGATCATCACCAAGGAGGCCTAGATTTTGATAAGCAACTTGATATTTAAATGGTCCATTTGCGGAGAACTCAATATGGTTTGTTCCAGTAAGTTGATCTCTATTCATAAATAAGGTGGTTAGGGATGTTACTATTGGAAACCCATCACCCGGTGCTGGTGAGCTCATGAAGTTATTCTTGCTTAGGTCCCTGTCATAACGGTGGACAGGCATCTCTGGTATAGATGGGGTAGTTCCAAACGACGACTATAGAGGACAAATCACGAGTCGAAATTGACTCTAACAAAGTGGTTATCCCTTGCTTTCACTAAATCATGCACATTGGGAAGGCG



gi|29679287|gb|CB675562.1|CB675562 OSJNEe11G04.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe11G04 3', mRNA sequence

AACTACTCCATCCGTCCCAGA
||||||||||| ||||| ||
ATGATGAGGTAGACAGGGACT

EST sequence (targeted fragment marked with yellow):
GAAAAGGGCATACTAGAAAACATCTGTTGCTGCTCTTTCTGCTAGATGGAGTACATAATTTTTTTTATGTTATGTTAGCTTGAATATTGACCTGGCCTCAAGTTGCTATGTTAGCTCTGAATTTTCCTAGCTTAACACTGCTAAGTCACAAGTGCGGCATTACAAACATTTCAGTAACTGATATTTATAGGATTAGATGTTCAATTAAGTTTCAGGATTTTGCTTTGTTTTTAATGAAGCATGATCTGATTTTTTTTACCAATTCATATAATTAGATGGCTGAGATTTGTTGTTTCATGTAATGCATGCAAAATGTTTGACTTAGAATTTTTCTTGTAGACAACTCAGGGACAGATGGAGTAGTAGTTGGAGGTCCAATATTATAGCCTAGGACACGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTCGAAATATGCCCTTAGCTGGTGAAGAAAATGTTCCAGGTGTTAATAATGTACAGCTACAAAAGAAGGTACACAAGAAGACAGCAAAGACTAACCAGCGAGCAGGCAACCATAAAAAGGGCTAGCAGAGGTGCTGTAAAAAAAATCAAGAACCTACAAGAACCATAAAAGAGATGATTTGTTTTGTTTTTGGGACCTCAATACACCTACAAGAACCTTAGTTACATCTAAATTATGTAATTATTGCTATGTACTTGAACTCTTATGTAATAGCTATTTGAGCTGATGGAAAGCTGCTATATAGGAATACTGCTACTTGATGGGTGAACAAAAGAG



gi|29688660|gb|CB684935.1|CB684935 OSJNEf14O22.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf14O22 3', mRNA sequence

AACTACTCCATCCGTCCCAGA
||||||||||| ||||| ||
ATGATGAGGTAGACAGGGACT

EST sequence (targeted fragment marked with yellow):
AAACATTTCAGTAACTGATATTTATAGGATTAGATGTTCAATTAAGTTTCAGGATTTTGCTTTGTTTTTAATGAAGCATGATTTGATTTTTTTTACCAATTCATATAATTAGATGGGTGAGATTTGTTGTTTCATGTAATGCATGCAAAATGTTTGACTTAGAATTTTTTTTGTAGACAACTCAGGGACAGATGGAGTAGTAGTTGGAGGTCCAATATTATAGCCTAGGACCCGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTCGAAATATGCCCTTAGCTGGTGAAGAAAATGTTTCAGGTGTTAATAATGTTCAGCTTCAAAAGAAGGTACCCAAGAAGACAGCAAAGACTTACCAGCGAGCAGGCAACCATAAAAAGGGGTAGCAGAGGTGCTGTAAAAAAAATCAAGAACCTTCAAGAACCATAAAAGAGATGATTTGTTTTGTTTTTGGGGCCTCAATACCCCTACAAGAACCTTAGTTACATTTAAATTATGTAATTATTGCTATGTACTTGAACTTTTATGTAATAGCTATTTGAGCTGATGGATAACTGCTATATAGGAATACTGCTACTTGATGGGTGAACAATAGTTACATGATGATATGTCAGAATGCATTTGTGAACAATAGTTATGAATAGTTGAATATTGTGTTATGCATGTGTGTAACTTTCTGG



gi|89191157|gb|CI393010.1|CI393010 CI393010 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J

AACTACTCCATCCGTCCCAGA
|||||||||||||| | |.|
ATGATGAGGTAGGCAAGATTT

EST sequence (targeted fragment marked with yellow):
ATATAATACGTTTCCATCTTATTTGATACATGTTGCTGCTCCATCTCGAAGACCATAACAAACTCCTACAACTGAAACCTGTGTGATGGAGATCAGATCAGCTTTTTGGGATCAGCTGAAAGTCTGTCCAAGATATGCTAATCCCAACCCAAATCAAATCAGAGACAATTTATTATGGAGAAAATTAACCTCAAGACATACACTCTAGTTTCTCTTTTATCCTACTAACTACTCCACTAATTGATTTACTACTTAGTACTAAGTACTCCCTCCGTCCTAAAATATAGTAATTTTTAGCTATAAATCTGTCCAGATTTATAATTAAAAATTGCTATATTTTAGAACGGATGGAGTAGTAATTAATCAAAATGCTCCACTAATTTGTATTTTTGAGGATAACTTCGGTACCTGTTGCTATACCTTGAAGACCATAAAA



gi|29623089|gb|CB628100.1|CB628100 OSIIEb03H06.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb03H06 3', mRNA sequence

AACTACTCCATCCGTCCCAGA
|| |||||||||||| ||||
TTTATGAGGTAGGCATAGTCT

EST sequence (targeted fragment marked with yellow):
TCCAATCACAACTCTCCACCACTTCACTTCTACATACTTTTTTAATAACCGCGTCTAACACTAAAACTTCTTATATTCTGATACGGATGGAGTATTTACTATCAAATTGTACTATATGATTTTGTTTCAATAAATCCATTTCATTTCAAACTCTCAAATTTATGAGCCAGTGACATAGTCATTGTCTCGCTTGTGCTGATTATAAGCCGCAACACCTTAATCCGCCAAAAAAAATATATTTTATGAACAAAAATTGCATATATGTGTTGTTAGAAATTTAAAGGCAAATGCTGAGAAATAAACTACTATTGAAAACCCTCTAAAAATTAAAATTCAAATTTTGGCTATAGCTTACAAGCTGAAGTGTTCCTGACAGCACTTAATCTTTCGTTTGTTTCAGTTAAATTTATTTTTTGTCAGTTTCAGAAATGATTTTGCTTCTTTTCAGCCTGTTTACACTGTGCTGCTGCTTCTGCTGCTACGAGACCTGCGAGTGCTGCCTCGAGACACTCTGCTGCTGCTGCTGACGTCGTCATGACGAAGTGATATGCAGACTGTGACGTCCACTGGGACACTCATCGTTGTCCATCTGCTTTGTCTGAATAAAAAATGTATCTATGTACTTAATTAATTATTTGAGTGCTGTAAATCTGCAATGCGTTGTGTTGATGTGTTTAATTACCTTTTCTTTTCTCTGCAATGGATGGAAACCTGGTGTATTTGTATGTTCATGAAATAAGTACTCTATGCAGTGTTTTGGCTTGAACAAAAAAGG



gi|88721938|gb|CI743450.1|CI743450 CI743450 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

AACTACTCCATCCGTCCCAGA
||||||||||| ||| | |.|
TTGATGAGGTAAGCATGATTT

EST sequence (targeted fragment marked with yellow):
GGGTGGGTGAAATTGAAAGATGAAATTAAGGTTGTAATTGGTAGAAAAGAGAACATAAGTGAAGAAATTAACTTAAATAGGAGATGGATGGATGGTTATGGTTGGTTGAAATGAGAGGTAAGTGAAAAAATAGCTATATATTATAACGAAATCAAACTATTAAAAAACTATATTTTAGTACGAATGGAGTAGTTATTAACACAACCAATATCAATCAGCGTCCTAAAGATCAATAATACCAAACTTGCAGGTTTTGTGATGTAAAGCCGATGAAAAAAAAAATACTAATTTGTGGTGTGGAGCTCCTCCAAATATACCCCCGAGTCCAGGACATACACTGTCGCTTCTACGAGTACATGGCCATACAATCTCACGAGCTATATGCTTATGACACATGG



gi|88825421|gb|CI775986.1|CI775986 CI775986 Oryza sativa (japonica cultivar-group) root of seedling 2ppm NAA(naphthalene acetic

AACTACTCCATCCGTCCCAGA
||||||||||| ||||| ||
ATGATGAGGTAGACAGGGACT

EST sequence (targeted fragment marked with yellow):
GCCATTTCTCCCCCTTCCACCGCGCACCGCCTCCTCCGCCAAATCCACCGCCGCGGCGCGCGGCCTCCTCCTCCGCCGCGGCGTGCCGCCACCTCGCTCCTCTCTCCCCATCCACCGCGCTGCCGGAGTCGACCTCGCGCCCGCCCAGGTGGTGGTGTGTGCCGGGTAGAGGAGGAGGAGGAAGCGAGGGCGTCGGACTTGTGCGTGCGCAGGTCCAGGGGCAGGACGACATTCGACGCGGTCGCCGACGAGACAACTCAGGGACAGATGGAGTAGTACTTGGAGGTCCAATATTATAGCCTAGGACACGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTCGAAATATGCCCTTAGCTGGTGAAGAAAATGTTCCAGGTGTTAATAATGTAC



gi|88386817|gb|CI629144.1|CI629144 CI629144 Oryza sativa (japonica cultivar-group) leaf of seedling irradiated with UVC [0.7 min

AACTACTCCATCCGTCCCAGA
|||.||||||||| |||| .|
TTGGTGAGGTAGGAAGGGATT

EST sequence (targeted fragment marked with yellow):
TGCACCAGGTCAATGTTGAGTATCTTGGTCGAGTTGTTTTCAACACAGATGGAATGATGTATCCTGACAGTGTGGTTGGTACCGATTCACACACCACTATGATTGATGGTTTGGGTGTTGCTGGTGGGCGAGTTGGTGGAATAGAAGCACAGGCCACAATGCTTGGCTCAGCCAATGAGCATGGTGTTGCCTGATGTGGTTGGATTCAAGTTGACTGGAAAGATACAGAATGGTGTCACTGCTACCGACCTTGTACTTACTGTCAACCAAATGTTAGGGAAGGATGGAGTGGTTGGCAAGTGTGTAGAATTATATGGCGAAGGCATGGGAAAGCGTTCTTAGGCTGACAGGGCCATAATGGAAGA



gi|44673185|gb|CR286619.1|CR286619 CR286619 Oryza sativa library (Han B) Oryza sativa cDNA clone y848g09p5, mRNA sequence

AACTACTCCATCCGTCCCAGA
|||.||||||||| |||| |
TTGGTGAGGTAGGGAGGGGCC

EST sequence (targeted fragment marked with yellow):
GGCGCATGTGTTGGTACCGGCGAATCGGCCATTATAGGCCGGGGAGGGATGGAGTGGTTGGATCTACTCAGAACATCTTAGATTTCATTAAAAACCATTTGATGGAAGCTTTGGATAGGAACATCGATGATCATCTTCAGTTTGTGTTAGGAACAGAATCCGGAATGATCACTTCTATCGTTGCTGCTGTCCGTGAATTATTTGATTCCTATAAAACTTCTCAACAAAGTGCTAATATTGAAGTTGAAATCGTGTTCCCAGTTTCTTCAGATGCTGTTTCTAATACATCTGTCAATGGTTCCCACCATCTTGATTCTTCAACAGTTACTGATTTAGACAATGTTAGTGTTGTTCCTGGTGTGAGTTCTGGCGAAGGTTGCTCTATACATGGGGGCTGCGCTTCATGCCCATACATGAAGATGAATTCTTTAAGATCACTGCTTAAAGTATGCCATCAGCTTCCTGACAGAGATAACAGATTAGTTGCCTATCAGGCTAGCCGATTCAATGCTAAGACTCCTCTGGGAAAATAGGTTGCACAGGTTGGGTGTGAGCCCATATTGCATATGCGACATATCCAGGCAACAAAGAGATTCCAGAAAACTCGTGCACCATAGTATCCAGGTAAAGAAAACCTAAATATACATGTTCCGGAACTTAATAAATCGTCAACTGTTAGAGAAACCCAGGTACCCAAGGAGGACCTAAGAAGATGAATACACCTGAGGCAGAGAAAACCGGCAGACGCACGCGCACAGAAAAATGAAAGAACCAAGGAAAGGAAAGAACACCACGCCCACAGAAGAGAAGCCTCCCGTTCGCC