| mature miRNA: AACTCTGATTCTAGAATTTTTG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|58667491|gb|CK056177.1|CK056177 54406rsicek_2708.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr AACTCTGATTCTAGAATTTTTG EST sequence (targeted fragment marked with yellow): CGGCACGCGGCCATCACCCTGAAATTCAAGAATTAGAGTTCAAGAACAGCAGCTTGCCATCAAGTTTTAGAAAGCTAGGTGAGACAGAGAAGCGATTTCCAGTGAGAAAGCGAATGGCTGGCCGCTCTTGGCCTCTCCGTGCTCCTGTGACTCGTGGACGCATGACGATGTGGCCTGAACTTGGTGGTAGATCACTCCCCTGCACGAGCGACGAACTTGCTAATGCATGGCTGGATGATGAAGATGTAAGAGCTGCCATTCACGCGGAACCGAAAAGCTTAATTGGGTCATGGGAACTGTATACTGCAAGAATAGAGTACTACCATGATACTGGAGACAGCATGGTGAAGTACCACAAGAAGTTCACAGCCATGGGATATCGCGCACTTATTTACAGTGGAGATCATGATCTCTGTATTCCCTATGTCGGAACGGAAGCATGGGTTAGATCCATGGGATACCGAGTAATTGATCATTGGCGACCATGGTACTTTGGAGGGCAAGTCGCTGGATATACACAAGGTTATGAACACAATCTCACTTTCCTCACCATAAAGGGAGCTGGACACACTGTCCCGGAGT | |||||||||
gi|88228352|gb|CI227832.1|CI227832 CI227832 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s AACTCTGATTCTAGAATTTTTG EST sequence (targeted fragment marked with yellow): ATTTTTTTTTCATGGAAAGCTATAGAAGGTTGCATTTGACAGTCACCATGACAATCAGACAGAAATTACAGAATAAGAGTTAACACCGCATGGAAATATCATTTCAACGCAAATGAGTGATTGGCATGCGTTGTACAAGATGCAACCAGATAGTCTGTGCAGTAAAACAAAAGCTAAACTCCTCAAAATCGCTTAAATTTCTCTGGCCGGTAAACCAAGTGACTAGCTGATATAAAACCTCCACGATGCCAACTACCAGTTTTGCAGAATAGGCAAGAAACCTTAGATGCTGCTAGGGTACATGAAGACGCGGACCTTCTTGCCCATGGAGGTGGGCGGGAGGTTGGACCGGAACTTGGCGCGGACGACGCCGGAGTTGCCGTGCGGGCGGGTGACCTTGCCCCAGATGCAGCGGATGGTGGAGTCGTTGCTCTTCGTCTTGGCCTTGTAGACGTAGGCGATGCGCTTCCCGGCGTACCACCCAAACTCCTCCTTGGTGTTCACCCCCTCGATCTGCAGCAGCGACGTGTTCTCGTACTGGTTCGACTTC | |||||||||
gi|58606022|gb|CK034055.1|CK034055 41920rsiceg_14715.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa c AACTCTGATTCTAGAATTTTTG EST sequence (targeted fragment marked with yellow): CCGGGCTGCAGGAATCGGCACGAGGATCAAATCTCGAGTTGAAAGTTTTCGAATCCGAGTAGAAAGTTTTCAAATTTGAGTTGAAAGTTTTCAAATCTTGAGTCGAAAGTTTTCGAATCTGAGTCGAAGGTTTTCGAATCGGAGTTGAAAGTTTTCAAATCTCGAGTTGAAAGTTTTTAAATCTGAGTCGAAAGTTTTTATATTTTTTCAAATCTTAACTTAAAAATTTTCAAATCTGTACTTGAAAGTTTTCAAATCAGAGTTGAAAGTTTTCAAAATTTATCTTACACATTTAAATTTCGAGTTGAAAATTTTTAATTTGAGTTTTCAAAGTTTTTAAAATTCGACTTCAAAAGTTTTCAATCGGTTAGTGGAAAAAATCTTCCGGAAAAAAGGAAATCATATCTTAATTACTGTCATTATCTATTAATAACTTAGTTAGTTAGGCTAAACTATTCGGAAACGCTCACCGCCAACACGCACGCGCGTGTTAGCTTTTCCGCACTTTTAGGTATTAGATTTGATCATTCGTATTATTTTGAAAGAAAATAGTGCTAATAAAATGAATAAATATAAGTCATATTCAACAGTCAACTGTGTAATATATTTTGAAACGAAAATGGTACTAATATATATTCCCTTCGTGTTATATTATAAGTCG | |||||||||
gi|58585843|gb|CF984151.1|CF984151 21110rsicee_3745.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa Ind AACTCTGATTCTAGAATTTTTG EST sequence (targeted fragment marked with yellow): GCACGAGGAAGTACTGCATGCCATGGTACATTTTGGGGCAAAGTTAATAATCTGTGCCAAGAAAAGATAGACAGAGTGCATTGGGAACTCAAGGACCTGAACAAGTACAACATCCTTGCTCCCTGCTACCATCACCCTGAAATTCAAGAATTAGAGTTCAAGAACAGCAGCTTGCCATCAAGTTTTAGAAAGCTAGGTGAGACAGAGAAGCGATTTGCAGTGAGAAAGCGAATGGCTGGCCGCTCTTGGCCTCTCCGTGCTCCTGTGACTCGTGGACGCATGACGATGTGGCCTGAACTTGGTGGTAGATCACTCCCCTGCACGAGCGACGAACTTGCTAATGCATGGCTGGATGATGAAGATGTAAGAGCTGCCATTCACGCGGAACCGAAAAGCTTAATTGGGTCATGGGAACTGTATACTGCAAGAATAGAGTACTANCATGATACTGGAGACAGCATGGTGAAGTACCACAAGAAGTTCACAGCCATGGGATATCGCGCACTTATTTACAGTGGAGATCATGATCTCTGTATTCCCTATGTCGGAACGGAAGCATGGGTT | |||||||||
gi|88835210|gb|CI370513.1|CI370513 CI370513 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AACTCTGATTCTAGAATTTTTG EST sequence (targeted fragment marked with yellow): GGTTCAATTCTCTTCTCATCTCGTTCTGGCATATTTAGGAGTACAGATTACATCACGATTCTAAGAGAAAAGGGGAATGGTGGTTATGTCCTACACCAAGTAATTGAAGCTATCAAATTATCATACAACAAGTGTATATGACGATTTCTCATACAACAACACACAGGGGAATCTGAATATTTGCTCAGAATTCAGACACGACAGAATATCCAGATGAAGTAGGGGCATCTGCTAATCGCACTCAAAAGTCCTGAATCTCATGGGATGGACCAAAACTGTTAGAAACAGAGTTGCTGTGGTTGGACAACCTGATGGCATCATTTGCCCAATAACCGGGGTCCCCGTTGGTTTGCCCCTTTAATTCTGAAGTTCAGTTCATCAACATCATCACGAAAGCATTCAGTGATTTATTTTGCCTTCAATTTCTGTGCCAATATCAATGCCATACCCTTCAGCTCT | |||||||||