| mature miRNA: AAGACGGATAGTTAAAGTTGGACA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86839677|gb|CI343617.1|CI343617 CI343617 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): ATGCATGCATCTTGTATACAACAAGGAACTACATTGGTTGTATCTGAACCAGAACCCAGCTGTCCAGAATTACCAGATGTCCAGATGTCCACAATTACCTAAACTTGGATCTCCTATCTGAACCAGCAGTCTACAGACCTACTCCCTCCGTCAAAGACAAACCCTGGCAATTGCGTGTCTAACTTTGACTGTCCGTCTTATATGAAACTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAACATGATTAATACTTTGTGCGTAACTTGTCTTTTTAACTTTTTTTAATAATTTGTTTAAATAAGACGGACGGTCAAACATTGGGTACGGAAACCAGGGTTTATCTTTTTTTGGGACGGAGGGAGTACCATACAAGTTATACAAGAACATAAACTAGTTACCTTCCGTACTATATCCAAATCCAACTTCGTAGCAGGTGATTGAGTTCTGGCTGGAAAGC | |||||||||
gi|88270759|gb|CI386017.1|CI386017 CI386017 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): CAAAACAGATAATTTGATGATGATTTGTAGGTAACCAGTTACAAAGTGTGCAGTAGTACAATCAGCTCGCACGTACTCCCTCCGTAAAAAAAAAAGACAAACCCTGAGTTTTACCCTGAGTTTGCGTGTCCAACTTTGACTGTCCGTCTTATATGAAAATTTTTATAATTCGTATTTTCATTGTGGTTAGATGGTAAACCATGATTAATATTTTATGCGTGACTGGTCTTTTTACTTTTTTCATAATTTTTTCAACTAAGACGGACGGCCAAACGTGGGACACGGAAACCAGGGTTTGTCTTTTTTGGGAACGAAGGGAGTACGTAACAGAGGGATGCAAGAGAAAACAAAAGTGCCAGAGCAAAGTTTCTTGGGTAACAACAGATGGGGGAAAATACAATGGGGACCTACAATCTCCCTTCGAATCATACATATGTTCCAGTCGTGGG | |||||||||
gi|86598395|gb|CI355012.1|CI355012 CI355012 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): AAGATGCTCTTAGAACAGCTCTGTTCAACTAGATCGAGACCACAAAAAGCCAAAAGCACAATAGTAACAAGCTCAGCTCAGAACTTCCATCGATCCAATAAAAAAAAAAAGGAACTAACCAGCGCCGCTGAGGGTGCAGCAGCACCAAATCCCACCGTTCTCCAGTCAGGCCTGGCAGGACTAGTCGCTGGCGCCTACAGCAAATGCGATCGAGGAGCACTGTCTGTCCACGGGCAGTGGCGGACCTGCAAGCAGCAACCTACTCCCTCCGTCCCAAAAAAAGGCAAATCCTGGGTTTGGGTATCCAACTTTGACTGTCCGTCTTATATAAAATTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAACATGATTAATACTTTGTGCGTGACTTGTCTTTTTAATTTTTTTCATAATTTTTTCAAATAAGACGGACGGTAAAACATTGGGCAGGGA | |||||||||
gi|55441365|gb|CV734001.1|CV734001 FLO--09-C20.g1 Rice flower lambda phage cDNA library (FLO) Oryza sativa Japonica Group cDNA c AAGACGGATAGTTAAA-GTTGGACA EST sequence (targeted fragment marked with yellow): TCCCCTTGGACCTGACTGGACTGAAGGAGTTTAAAAGAAATCGAAAGCGACAACACCTGGCGGCTTGGTGCCGAGAAGCTGGCAGGAAGGCTCTTCACATTTGTTCACCTTGATTGATGTAGTATTCTTTCTTTGCTCACTAACAAAAATAATTATACATTCATTAGTGGAGTCAATTCTCATATTGATTCTTTTTCTTTGATTGATATGGAGTCGTGGCCATCTCGGCGACGGCACATTTGACATGCATGATGCATGCGTTGTACTGGTGCTGTACTCGCTCCATCAAAAAAAAAAAAGACAAACCCTATGTTTTTGTGGCCAACGTTTGACTATCCGTCTTATATGAAATTTTTTTATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC | |||||||||
gi|89164707|gb|CI101795.1|CI101795 CI101795 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): TTTTTAGGTACCTGAAAGCTTAATCATTCGATTATGTGCAACTTCGTAGAAATATTATCTAGTGACATGTCACTATTCATATGCACAATGATACCAAGTTGGTCACAAAAGTATGTGGAGTACGTGTCTTTTCCTCTTAGCAGGTGACGGGTACCTAGTACGTATACTCCCTTCGTCTCAGAAAAAAAGGCAAACCCTGAATTTTCGTGTCCAACTTTGACTGTCCGTCTCATATGAAATTTTTTATAATTCGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTCATAATTTTTTCAAATAAGACGGACGGTCAAACGTTAGACACGGCAACCCGGGTTTGTCTTTTTTTTTTGGACGGAGGGAGTGTACCTACGCAGCCATCTACTTGCGGACTAAAGTCACCAGGCAAAGCAACACTCCAAGCCAAACAAGCCGACGCACGGCGGCGTCAGCTCGCCGCGAAACCGCGCCTGCGGGGATGTAGCACGAGCTGGTCTGCGGCACCT | |||||||||
gi|88481422|gb|CI418693.1|CI418693 CI418693 Oryza sativa (japonica cultivar-group) 4th leaf leaf 3mM SA(salicylic acid) for 1 da AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): AGTGATGCATGCATCTTGTATACAACAAGGAACTACATTGGTTGTATCTGAACCAGAACCCAGCTGTCCAGAATTACCAGATGTCCAGATGTCCACAATTACCTAAACTTGGATCTCCTATCTGAACCAGCAGTCTACAGACCTACTCCCTCCGTNAAAGACAAACCCTGGAATTGCGTGTCTAACTTTGACTGTCCGTCTTATATGAAACTTTTTTATAATTCGTATTTTTATCGTTGTCAGATGATAAAACATGATTAATACTTTGTGCGTAACTTGTCTTTTTAATTTTTTCTCATAATTTGTTTAAATAAGACGGACGGTCAAACATGGGGTACGGAAACCAGGGTTTATCT | |||||||||
gi|89180913|gb|CI044996.1|CI044996 CI044996 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): TTTTTTTTAGGTACCTGAAAGCTTAATCATTCGATTATGTGCAACTTCGTAGAAATATTATCTAGTGACATGTCACTATTCATATGCACAATGATACCAAGTTGGTCACAAAAGTATGTGGAGTACGTGTCTTTTCCTCTTAGCAGGTGACGGGTACCTAGTACGTATACTCCCTTCGTCTCAGAAAAAAAGGCAAACCCTGAATTTTCGTGTCCAACTTTGACTGTCCGTCTCATATGAAATTTTTTTATAATTCGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTCATAATTTTTTCAAATAAGACGGACGGTCAAACGTTAGACACGGCAACCCGGGTTTGTCTTTTTTTTTGGACGGAGGGAGTGTACCTACGCAGCCATCTACTTGCGGACTAAAGTCACCAGGCAAAGCAACACTCCAAGCCAAACAAGCCGACGCACGGCGGCGTCAGCTCGCCGCGAAACCGCGCCTGCGGGGATGTAGCACGAGCT | |||||||||
gi|88491805|gb|CI429077.1|CI429077 CI429077 Oryza sativa (japonica cultivar-group) 4th leaf leaf 3mM SA(salicylic acid) for 1 da AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): AGTGATGCATGCATCTTGTATACAACAAGGAACTACATTGGTTGTATCTGAACCAGAACCCAGCTGTCCAGAATTACCAGATGTCCAGATGTCCAGAATTACCTAAACTTGGATCTCCTATCTGAACCAGCAGTCTACAGACCTACTCCCTCCGTCAAAGACAAACCCTGGAATTGCGTGTCTAACTTTGACTGTCCGTCTTATATGAAACTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAACATGATTAATACTTTGTGCGTAACTTGTCTTTTTAATTTTTTTCATAATTTGTTTAAATAAGACGGACGGTCAAACATTGGGTACGGAAACCAGGGTTTATCTTTTTTTGGGACGGAGGGAGTACCATACAAGTTATACAAGAACATAAACTAGTTACCTTCCGTAGTATATCCAAATTCCAATTCGTAGCA | |||||||||
gi|86525896|gb|CI166102.1|CI166102 CI166102 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): GGTGTAGAGAGTATCTAGATACTGTTTTAACGTGTTTCTTTAGTCATAAGTTAACATATATTTTGAAGTGGATATACTAATTAACACATACTTCCTCTTCTCATCTTTTGACATATAAAAGTCTATAAAAATACTCCTCCGTCTAAAAAAAGGCAAATCTTGTATTTCCGTGTCCAACTTTAACTGTCCGTCTTAATAAAATTTTTTTATAATTTGTATTTTCATTTGTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTCATATTTTTTTCAAATAAGACGGACGGTCAAACGTTGGACACGAAAATCAGGGTTTGTCTTTTTTTTAATGTAGGGAGTAATCTAGATACTGTTGTAACGTGTTTCTTTAGTTCTAAGTTAACATATATTTTGAAGTGGATATACTAATTAACACATACTTCCTTCGTCTAAAAAATAATTTAAAACTGGATGTGACATCTTAGTATAACGAATCTAAACACATGTATGTTTAAATTTATTGCATTAGAATATGTCATATCCAGTATTATGCTGGTTTTTCTTTATGCTACAAGTATTAATGATTG | |||||||||
gi|88223117|gb|CI222966.1|CI222966 CI222966 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): ATGAAATAGTAACTTTTTTACAATAAGCCTACACGGCATGAAACAATCATATGGTGTGAGTAAACATTTTACTCCATGACAATATAACATAGATCTAGACACCGGCCGGTGGTTGGTGGCGGAGATGGCTGGCGCTGGCTGGACATTGACGGAGTCGCGTCATGGAGGTGGCCGTTGCTGCTCCTCCATGGCACTAGCTAGCAACCGGATCTGAAAATGTACTTGGTTGTATTCACATGAGCATAATGTACTCTGCTATACCAGCGCCGCTGAGGGTGCAGCAGCACCAAATCCCACTGTTCTCCAGTCAGGCCTGGCAGGACTAGTCGCTGGCGCCTACAGCAAATGCGATCGACGAGCACTGTCTGTCCACGGGCAGTGGCGGACCTGCAAGCAGCAACCTACTCCCTCCGTCCCAAAAAAAGGCAAATCCTGGGTTTGCGTATCCAACTTTGACTGTCCGTCTTATATAACATTTTTTTATAATTCGTATCTTTATTGTTGTTAGATGATAAAACATGATTAATACTTTGTGCGTGAC | |||||||||
gi|88225831|gb|CI225747.1|CI225747 CI225747 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): TGATTTGTAATACTTGGTTACTGCTAAGCAAGGGAATAATATTAAGATGCTCTTAGAACAGCTCTGTTCAACTAGATCGAGACCACAAAAAGCCAAAAGCACAATAGTAACAAGCTCAGCTCAGAACTTCCATCGATCCAATAAAAAAAAAAAGGAACTAACCAGCGCCGCTGAGGGTGCAGCAGCACCAAATCCCACCGTTCTCCAGTCAGGCCTGGCAGGACTAGTCGCTGGCGCCTACAGCAAATGCGATCGACGAGCACTGTCTGTCCACGGGCAGTGGCGGACCTGCAAGCAGCAACCTACTCCCTCCGTCCCAAAAAAAGGCAAATCCTGGGTTTGCGTATCCAACTTTGACTGTCCGTCTTATATAAAATTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAACATGATTAATACTTTGTGCGTGACTTGTCTTTTTAATTTTTTTTATAATTTTTTCAAATAAGACGGACGGTAAAACATTGGGCACGGAAACCACGGTTCGTCTTTTATTGGTACGGAGGGAGTACATCTCTGCCTGGGTCTCTGCTATGCTTCGACAGCC | |||||||||
gi|86537744|gb|CI177950.1|CI177950 CI177950 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGCTCTTAGAACAGCTCTGGTTCAACTAGATCGAGACCACAAAAAGCCAAAAGCACAATAGTAACAAGCTCAGCTCAGAACTTCCATCGATCCAATAAAACAAAAAAGGAACTAACCAGCGCCGCTGAGGGTGCAGCAGCACCAAATCCCACCGTTCTCCAGTCAGGCCTGGCAGGACTAGTCGCTGGCGCCTACAGCAAATGCGATCGACGAGCACTGTCTGTCCACGGGCAGTGGCGGACCTGCAAGCAGCAACCTACTCCCTCCGTCCCAAAAAAAGGCAAATCCTGGGTTTGCGTATCCAACTTTGACTGTCCGTCTTATATAAAATTTTTTCATAATTCGTATTTATATTGTCGTTAGATGATAGAACATGATTAATACTTTGTGCGTGACTTGTCTTTTAAATTTTTTTTCATAATTTTTTCAAATAAGACGGACGGT | |||||||||
gi|33682626|gb|CF310865.1|CF310865 ABF--05-M09.b1 ABF3-overexpressing transgenic rice plasmid cDNA library (ABF) Oryza sativa Ja AAGACGGATAGTTAAA-GTTGGACA EST sequence (targeted fragment marked with yellow): ACATGGCATGCTTTCACGATCTTCAGAGCTTGGTGGCATCAGAGCTTTGCTCCCTGCTCAAAAACGTTTTCAGCATGGGCACGAACAAAGTTACCGCACTTTCGGGTACAACGTCGATAGAATTTGTGAATCATGGGCGTGTTAAGAACCTACATGCTGCATTATCTTAAAGAAATCGAAAGCGACAACACCTGGCGGCTTGGTGCCGAGAAGCTGGCAGGAAGGCTCTTCACATTTGTTCACCTTGATTGATGTAGTATTCTTTCTTTGCTCACTAACAAAAATAATTATACATTCATTAGTGGAGTCAATTCTCATATTGATTCTTTTTCTTTGATTGATATGGAGTCGTGGCCATCTCGGCGACGGCACATTTGACATGCATGATGCATGCGTTGTACTGGTGCTGTACTCGCTCCATCAAAAAAAAAAAAGACAAACCCTATGTTTTTGTGGCCAACGTTTGACTATCCGTCTTATATGAAATTTTTTTATAATTAGTATTTTCATTGCTGTTAGATGATAAAACATAATTAATACTTTATGCGTGACTTATCTTTTTAAATTTTTTCACAAATTTTTCAAATAAGACAGGACGGTTAAACGATGGACACGGAAACTAGGGTTTTTTTTTTTTTTG | |||||||||
gi|88474741|gb|CI412012.1|CI412012 CI412012 Oryza sativa (japonica cultivar-group) 4th leaf leaf 3mM SA(salicylic acid) for 1 da AAGACGGATAGTTAAAGTTGGACA EST sequence (targeted fragment marked with yellow): AGTGATGCATGCATCTTGTATACAACAAGGAACTACATTGGTTGTATCTGAACCAGAACCCAGCTGTCCAGAATTACCAGATGTCCAGATGTCCAGAATTACCTAAACTTGGATCTCCTATCTGAACCAGCAGTCTACAGACCTACTCCCTCCGTCAAAGACAAACCCTGGAATTGCGTGTCTAACTTGGACTGTCCGTCTTATATGAAACTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAACATGATTAATACTTTGTGCGTAACTTGTCTTTTTAATTTTTTTCATAATTTGTTTAAATAAGACGGACGGTCAAACATTGGGTACGGAAACCAGGGTTTATCTTTTTTTGGGACGGAGGGAGTACCATACAAGTTATACAAGA | |||||||||