| mature miRNA: AAGAGCGCCATGGCACGCAGC species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161808822|gb|FC099506.1|FC099506 CACW26475.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD AAGAGCGCCATGGCACGCAGC EST sequence (targeted fragment marked with yellow): CGATCTAGCCCACACGGCGTTGTGCTGGGTACCATGGCGCTCGTGCCTCTCTTGTCGCTGATCTACGCTGGGACAGTTCTGCACCAGGTGCTGGTCGTGTCAAAGCTGCCGCTGGATGGCCTCTACACTTGGCATCCCATTTGCACCAACCTCTTCATCATTTTCGCTTCTCTGGGCATTTGGTCGGCTCAGAGCATCCGTGGCAAGGCGGCTCTGTCCCGCAGCGCCAAGGAGCCGTACGTGACCCGCCACGCCATCTTCAACTGGCTGGCTTTGTTCAGTCTGGTGGGGGCCGGAGCCACCATCTACTTGAACAAGGAGCGCGCTGGCCGTCCGCACTTGGCCACCTACCACGGCGTCGCGGGCGCCTCCGTGGCGGGCTTCTTTGTCATGAACGTGTTTGGCGGCGGTGCGATGAACACGGTTCCCTCCCTGTACAAGTACATCAAGTTCCACAGGCTCAACGGCTACATCCTGTTCCTGGCGCTGCTGGGCGCGCACGGCACCGCGGTGTGGCGGGGGTACGCCGGCTTCAAGACGGAGCCCACCGGCAGGTACGCGCTGGTGGGGCTGCTGGGCGCCATGGGCCTGGCCGTCCTATCCGGCGTAAAGCTCAGCCTACTGCCGGGTGGCGCCGCCGCCAAGGCCAAGGCCAACTAAGGATTGTGTGTCGTGAAGCTATAGGTAAATGCAGTATAGCAAGGGCTTCTCGGAGAAGATAAAGTGCATTGAGATTGTACTGGTATTGAAACTGGAGCTCATGGGCATTGGCCGGCCGCCGGCGCACAGCAGCAGCACGGCGGGTGATGG | |||||||||
gi|161803175|gb|FC093194.1|FC093194 CACW23352.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD AAGAGCGCCATGGCACGCAGC EST sequence (targeted fragment marked with yellow): CGATCTAGCCCACACGGCGTTGTGCTGGGTACCATGGCGCTCGTGCCTCTCTTGTCGCTGATCTACGCTGGGACAGTTCTGCACCAGGTGCTGGTCGTGTCAAAGCTGCCGCTGGATGGCCTCTACACTTGGCATCCCATTTGCACCAACCTCTTCATCATTTTCGCTTCTCTGGGCATTTGGTCGGCTCAGAGCATCCGTGGCAAGGCGGCTCTGTCCCGCAGCGCCAAGGAGCCGTACGTGACCCGCCACGCCATCTTCAACTGGCTGGCTTTGTTCAGTCTGGTGGGGGCCGGAGCCACCATCTACTTGAACAAGGAGCGCGCTGGCCGTCCGCACTTGGCCACCTACCACGGCGTCGCGGGCGCCTCCGTGGCGGGCTTCTTTGTCATGAACGTGTTTGGCGGCGGTGCGATGAACACGGTTCCCTCCCTGTACAAGTACATCAAGTTCCACAGGCTCAACGGCTACATCCTGTTCCTGGCGCTGCTGGGCGCGCACGGCACCGCGGTGTGGCGGGGGTACGCCGGCTTCAAGACGGAGCCCACCGGCAGGTACGCGCTGGTGGGGCTGCTGGGCGCCATGGGCCTGGCCGTCCTATCCGGCGTAAAGCTCAGCCTACTGCCGGGTGGCGCCGCCGCCAAGGCCAAGGCCAACTAAGGATTGTGTGTCGTGAAGCTATAGGTAAATGCAGTATAGCAAGGGCTTCTCGGAGAAGATAAAGTGCATTGAGATTGTACTGGTATTGAAACTGGAGCTCATGGGCATTGGCCG | |||||||||
gi|14234515|gb|BG853331.1|BG853331 1024036G11.y2 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN AAGAGCGCCATGGCACGCAGC EST sequence (targeted fragment marked with yellow): CTCTTCGGTAAGAATACAACAGCCCCTCGGGCTGGGGGAACACCCGCTGGTGCTCCACCGTGGTGGCGGTCGGTCTGGATCTGGTGGGTCCTCCGGTCTGCTGGGTTTTGGGTGCGTGGCTGGTGTGTCCGGTGTCTCGGGTGTGTGTCCTGGTTCGCTGTTGTTTCTGTGTTGGTTGTTGGGTCTTTGTGGTGGGGTTGGGGTCGCGCCGGGAGGGTTCGGTCGTTTCGGGGGGGGGCCGCGGTTGTTCGCGGTGTGTGTGGCGTGCTCCTTGTCGGGGTCTGGCCCGCGTTCTGGCTCGCCCGTGCCCGTGGTGCCCTCCATCGTCTTAGCTCGCCTTGGTTGCCCGCGTGTCGGTTGGTGTGTCTTCTTGCTGGCGTTCAGAGTTTGTGCCGGTGTTTTTGCCGTTGCCGGCGCCGTTGTGTTCTCCTTGGGGCCGCCGCGGGNTTCCTTCCCTGTTTCTGCCGTTCGTTTCCGCTCCTCCCACGCCTGTTTTTCTTGTTCGTTTGCCCTTGTGTGTCGTTGTGTTCCTCTTTCTTCTGCCCTCGTTGCACCCTCCCCTCTTCGTTGCCCCTGCGTCCTCCTCTTCCTTCTCTCGGTCCCGTTTGTCGTTCTTATTCTTTGCCCCTGTCTTTTCTGTCTTGCTGTTCGCTCTCGGTGGTGGGCCGGCGCCGCGTGCCATGGTGCTTTATGTCTCTTCTCACCTCTGTCTCTCCGTCCCNTTACGTTGCAATCGCTTCTGCATCCCCTCTCTGTTCNTTCTACTTCTCTTGTCTTGGCGCGGGTGGGCGCCCCACGCGCGGNTNTNTGCTTAACGCCGCCCTGTNTCGTCTTCTGTCAGCCGATAGTCTGGTGGGTGACGATTGATGTAGGACGTTGCGCCGGTACCCCTGCTCG | |||||||||
gi|23360578|gb|BU648398.1|BU648398 1112069B11.y1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II AAGAGCGCCATGGCACGCAGC EST sequence (targeted fragment marked with yellow): GCACGAGGCTGACTTGCAATTTGGCGAATTGACCGCTGCCTGCAACACTCTTTTGTTAAGATAGGATATCGGGACAGCTCTCGTGCAATTCGTCTAGAATCCGCAACACTTCCTGTGGACCTGCATCGCTGTGCACGATGGCGCTCTTAAATCGACAAGTGATGTCAAGTCGTAGGTTCACAACTGTTGCGCCGGGTTCGCTGCCGGTCCAGCGGACGCGCCGGGTACCATGTAGAGTCCTCAGCGAACGACAGTCACTCGCCCCGTCTGAGCTTAGCCTATCTGATACTGACACCGATGACTCGAAGCCATCGACGAGCGTCCGGACTGGAAGCCTGGAGGAGGTTTCTCGCGTGCTCTTCAACACGGGGCATTTGGAGGACTTGTCGCGCCGCCCAGAGCTCGCGCTCTACCTTCCCTTCGGGTTTGCTCTGGCCGCAATTCGCTCAGCGCTGTGGATTGCGGGAATCGCGCTGGACGCGCCATGGTTCCGCAACCAGGCCGTTGTGGACGGCTACCTAAAGCTGCTGGGAGTCTCCGTCACCTGAGTCAACCCGGAACGCATCCCCGCGGGTCGGCACCTGCTGGTGTCCAACCACTGCACCGTGGGCGACCTCATGGTACTCTTCTCCACCCCGCCCT | |||||||||
gi|16071983|gb|BI873979.1|BI873979 963112E10.y1 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo AAGAGCGCCATGGCACGCAGC EST sequence (targeted fragment marked with yellow): GCACGAGGGGCACGGTCACCAGGCACTGTAAAGCTAGAGGACGAGGCCTGCATGGACGACCAGAAGGTCAAGGCCTTCATGAAGCAGCACGGCCTTCCGCTCTGTATCCCCGAGCGCGAGCTGGGCAAGGGCGCATTCGGCCACGTGGAAATGGTGATCATCACCCTGCCTGACGGCACCACCATCAAGGCCGCACGCAAGACCCTGCACGCGTGTGAGACCAAGGGCGCTGTGGCCGCACTACGCCGCATACTGAACCAGGAGCTGGCAGGGCTGGCTATGCGGAGGGCGGCTCCGTAGAGAACCTGCTGAACGCGCTGGCCAAGGAGCACTTTGATCGCATTGACAACGCGCCCGAGCGCCGGCGCACCGGCAAGAACAAGGACAAGTTTGAGATGCTGCCGTACCCCGGCAACACGCTCATGGATGAGGCTGACCTGAAGGGCATGCTGCGTGCCATGGCGCCCTTCATCAAGCACCTGAACGCTCGCGGCTACATGCACTTCGACCTGAAGCCCGCCAACCTGCTATACGACATCGCGCCTGATGGCAGCAAGGTCTTCCGCGTGTGCGACTTCAACCTGGCAGTCAAGACCGACAGCAATGGCCGCGTCGCGCGCGCCCAGNGCGGCACGCACCCGCGGCTTCTGGGCGT | |||||||||