miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAGCCCAGGATGGATAGCGCC
species: Pinus taeda
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|74159102|gb|DT629034.1|DT629034 EST1155604 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PIMD485 5' end, mRNA 

AAGCCCAGGATGGATAGCGCC
||.|||||.|||| ||. |||
TTTGGGTCTTACCCATTACGG

EST sequence (targeted fragment marked with yellow):
ACCTCCTAATTTGACTCCAAGTTTAAGGCTACCCGGCTCGGCATTACCCATTCTGGGTTTCTCAACAGTTACGGATGCAAGTGGCTTCATGGAACTTATGGATGCAGACGTGGACACAATTTTATTGTAGGCAACTACCTTCTCGGCCTTCCGAATTGCCATCTCCTGCAATTCAATTCTCCTTTTGTGGCTCTGAACTTTCTCTTTTGCTTGGAAATGTAGGCACCAGTCACATACATTTAGTTCCAATTGATCGGAATACAGCTTGCTGCAATATATATGTTGAAATCGATGGTGGCATCTGAGGCATCTGAACAAGCGTTCCTGAAATCCAAGGTCGCCACACATGCAGCATTCTCTTCCCTCTTGTTTCCTGGTATTCTCGCCGGAATTACATTTGATTTCTGTTCGTTGTTGATCCATAGCCGAGCGCCAGAGATTGTTTTACGTGGATGAATCCCGCGT


gi|74154473|gb|DT625557.1|DT625557 EST1157481 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMA126 5' end, 

AAGCCCAGGATGGATAGCGCC
|||||||||||||||||||||
TTCGGGTCCTACCTATCGCGG

EST sequence (targeted fragment marked with yellow):
GTAGGTATTTATAGAGAAAATGACCGGACTGGCTGCATGCCCGGCATACGGCAAAGACAAAGCAATCTGCACACGAATGCAACAGTGTGAAAGAAGATTTGGCGAGGAGGGGTGGGGGAGTCCTCCGGCAGGGGGCCGTGGTGTGGAGTCGTTTTCGACGGTTCAATACCTTTACCGGATCTCAAGGCTTTTTCACGCGAAGAAGTAAAAGCTGCTTTTCTGTACCACTCACGTATTCAATGAGATCTTCCTTCGCGCGGCTTGGAGGACGAAATTGGATATGACGGAGACGAGAGGGGTGAGGTTCGAGTTTCGTTGGGCGACCGGGTTTTTTATGATTGGACATACGGCTGCTTCCAGAGGCCTGAATGGAGGGGATGGTGGACTCCACCATGGCCTGTCTTTTGACCGTTTTTGGAGTCTCGTGCATTCCAGGGGTGGTTGGTTCTTTTTTTTTCTAGTACAACACACACAGCGGCGCAATATCGTTGCGTGATCTCAATGGAGAGAATAGTAGTAACGTGGGGTCGACTGTTCACGGGAGGAATCTCTATCTCATCTCATCTCATCTGTTCTCCTTCCCTCTGACCTTTGCCTGGCTACAGTATGGGGAGCCCCCTCCCCTTCAGGCTTATTATAAGTATTCGGCTGTGGAGCCTTCTTTTTCGTGAGGATTATTTTAGCTTATTGCTGGGCTTCCATGGCGAACCAGCATTGGAACACTGTTTTGCCCAGCATTATGTGAATAAAAAAGGGTTTATGATTTTGTCCTCGTGTTCAGTCACGGGTTCGGTTTCAGATCGGCCAAAAGAAATTTCCTGCGGGGAGCTATTTTTTGCGGCATGATGGAATTACAAAGCTCAGAGGGATAGCGCCCACTGCAAATTTCAAGTGGGGCTGGCGCTATCCATCCTGGGCTTCATAATTTCTTTAT


gi|67551754|gb|DR092781.1|DR092781 STRR1_4_A02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_4_A02_A033 3', mRNA 

AAGCCCAGGATGGATAGCGCC
|||||| |||||.| |.|.||
TTCGGGGCCTACTTCTTGTGG

EST sequence (targeted fragment marked with yellow):
ACGATAAAAAATAACTGAGGCTTAATAATTACAGAAAAATGGGTTTAAGTTAGGGTTACTTATTACAGAAAAATGGGCCCCAGCCACCAGCAAAATTATACTGCTAAATGATGCCATTGAGATGATAATATCGATCCCAACAAAACCACAATATGCAACAATACTACTCACACAACTGTAAGTAGCTGACCTACACTAACAATGGAAGATCACTAAGATTACAGAACACATGGTAATAATAATGCAACATAGGATTTATGTATCAAAGACAGCCTCAATTTTATTTCTCCAATTCAGAATATCGAGGTTTATCAAAGCTTTGAAGGATGTTGCACAAACCCATCATAAATCCTGGGGAAAAATCTTGCATTCCTCGTTATGGAATGCTTCGTCAAGGCCAAATTCAGAAAACCCTAAGAGGGTTTGCATTGAAGCCCGTTTCTGAGTCGTTTCGTGCTTTGCCCAAACGAGCAATATCGAACTGAGCTGTATAATTATATTTTGGTTTTGCAGGTTCCATTGTTGTCAGGGGAGGTTGATTTAGATATGCATAGTTGCTCTTAGTCCACCAGTCTTTTACACCGATTCTCGTTTCCTCGGCCGTATCGCTGGTGTTCTTCATCCGGGGCTTTTCATCGTCGGCTAATGAATCTTCAAATCGCTGGTAATCTTCAGCAGTGAAAGTTCGTGCTTTGATACGCGCTGCAGATTTGAATGCAGACAATAGATGCTCCTCCTCTATNATGCGCTTCGCTCGCCAGTAATTCGCTATTTCTTCCTTCGTCATCGAATTGTTGAAGTGAAGCCTCACTTGCTTAGCATCACGAATTGG