| mature miRNA: AAGCTCAGGAGGGATAGCGCC species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156669624|gb|AM791738.1|AM791738 AM791738 seedling library, SL Nicotiana tabacum cDNA clone nt002177067, mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): TGTACTGGACCAAGAAGAAATGGTGCTCGGAGTCATGGTTCAACCATGTGAAAGCGATGAAACGAAGCATCAATTATCATCTTAATCCATGCAGCGGTGTTATCCTTCCTGAGCTTATTCTTCTTACATTTGTTTCTCGTCTCTTAGAAAACTGGAGAAATGGCTCGAGTTTTCTTGACCTTGCAAGTCCGAGACCTGCTATATACCCCTAAAGCTTGCAAGGTTACTTAGAGTCCTTATTTCTTTTCTATCCCTCCTGAGCTTCTTTCTATTTTCCGCATTAACCCTTCTCTAAAGGTTGTGGTGTATCATTTCTATTTTTATATTGTAAAACAAATTCTCTCTATGTTTGTTTCTCTGTGTGTGTAGTCTTTGTAAAACAGCATACTGAATGAAAATGCCAGTCTTTGTTGTCTTTTTGGCATGTGCCCATTAGCTATACAAAGATCCAACTGTGAAATAAAAGAGTGTAC | |||||||||
gi|190730796|gb|FG135851.1|FG135851 AGN_ELP009xi17f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): TCGGTCCGGATTCCCGGGATAACTTCCACAGTCCATTACCAATTGTACCAACTTGGTTTGGGTTTCGTTATCCAGCAACCGACTTTCTGGAGAGATACCACATGGAATTGGGAATCTTGCAAATCTTGCTATCCTTCAGTTGGGTAATAACTCACTTACTGGACCAATCCCTCAGGGATTAGGTACGTGCAGGAACTTGATATGGCTAGATTTGAATAGCAATGCTCTAACCGGCTCAATCCCTCCCGAGCTTGCTGATCAAGCCGGCCTCGTTAATCCTGGAATTGTTTCTGGGAAGCAGTTTGCTTTTGTGAGAAATGAGGGTGGGACTGAATGCAGAGGTGCTGGTGGATTGGTTGAGTTTGAGGGTATCCGTGAAAAGAGGCTTGCGATTTTTCCTATGGTTCACTCCTGCCCATCAACTAGGATCTATTCTGGGACGACAGTGTACACCTTCACGAGCAACGGTAGCATGATTTACCTTGATCTCTCCTACAATGCTTTATCAGGAACTATTCCTGAGAATTTAGGTTCAATGAGCTTTCTTCAAGTTCTGAATTTGGGACACAACAATTTCACTGGAACCATTCCGTTCAACTTTGGAGGTCTGAAGATAGTTGGAGTTCTCGATCTGTCACATAACAGCCTTCAGGGATTCATTCCACCCTCGTTAGGAGGCCTTTCGTTTCTTAGTGATCTTGACGTCTCAACAATAACCTATCTGGAGCGATTCCTTCTGGCGGACAGCTGACTACTTTTCCAGCTTCAGATATGAAAACAATTCAGCCTTTGTGGGGTTCCCTTCTCTGTGCTCTGGCAGGACACCGTTCATCAGCATTACATCATAAGAATAAAAGCTACACTATAGGATG | |||||||||
gi|156666838|gb|AM800780.1|AM800780 AM800780 DL, diurnal library Nicotiana tabacum cDNA clone nt005124018, mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): TGTTTTACTACACTACTGAAATAAAAAATATAGATTTTCCTTCAATTGTTGCAGTAACTTCTGCCAAAGCCATGGCTGAGCTAGACGAAGAAGATATGGTGCCTAAACATAAGTACTTATCTTGATACATGAAGTGGTGGTATCCCTCCTGAGCTTATTCTTCTTACATGCTCTTCTCGTCTTTTCTAACTTTAGAGGAGCGGTTCGAGTTTTCTTGACCTTGCAAGTCCGAGGTCTTCTCATGTGGACTCTCAAAGTGACAAAGTTGTTAAAACTATGGTCTTGTTTCTATCCCTTCTGAGCCTATTCTTTTTCTAAACAAACCCTTTCGCTAAGATTGGGTCATGTCATTTTATCTCATATTATTAATACATGTTCTTGAGCGGCCGCTCGTAGAACTCCTCAATCTCGTTTTAGCAACTGTTTTCAAGCATGGGACATAATAAAATGGGCTAAAACTCCTTCTGATTTCAAATATTT | |||||||||
gi|92032322|gb|EB444027.1|EB444027 KR2B.102F11F.051227T7 KR2B Nicotiana tabacum cDNA clone KR2B.102F11, mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): TGAAAACAAATTTACTGGTGGATTCCCAAAATACCTGTGCCAAAATGGGAACTTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCATGTACTTATTCCTCTTGTAAGTCTTTACAGAGATTGAGGGTAAGTAATAATCAACTTTCTGGGAAAATATCTGATGGTGTATGGGGACTTCCAAATGTGTTGATGCTGGATTTCAGTGATAATAAGTTCAGTGGAACTATATCTCCTGATATTGGGACTGCTACTAGCTTGAGTCAGTTGGTGTTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAAGTTGGGAAACTCACACAATTGGAAAGGCTGTACTTGGATAACAATGAATTCTCCGGCGCAATACCTTCTGAGCTTGGTAAACTGAAGCAACTTTCATCTTTGCATTTGGAGAAGAACTCATTCTCAGGGACAATCCCATCAGAATTGGGTGAATTTCCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCTTTATCGACAATGACATCTTTGAACTCTCTGAATCTTTCACACAACAGGCTCACTGGTAAAATACCGACTAGCTTGGACAATCTGAAGCTGTCGTCGTTAGATCTCTCTAACAACCAGCTATCAGGAGAAGTTTTATTGGATCTTTTAACAATGGGAGGAGATAAGGCATTTGCTGATAACAAGGGACTTTGTGTTGACGAAAGCATCAAATTCTCAATGAACTCGGGCTTGGGGGGTTGTGGTGGAAAGGCTGCTCAACACAAGTTAAACAAACTAGTTGTATTTTGCATTGTGTTGCTTTCCTTAGCTGTTCTA | |||||||||
gi|190862128|gb|FG135208.1|FG135208 AGN_ELP011xa16f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): GGAATTCCCGGGATCTTGATTTGTCTTTTAATATGTTTGGAAACTCTATTCCTGGAGAATTTGGTAGGCTCAACAACCTTAAAGCATTGAACCTTTCAAACAACTTGCTCACTGGTTCAATACCTGATGAGCTTCAAGGGTTAGAGAATTTGCAATATTTCCAAATATTTACTAACAAATTGAATGGTTCTATTCCAATGTGGATTGGGAATTTGACCAACCTTAGAGTGTTTGCTGCTTATGAGAACGAGTTTAGTGGTGATATTCCAGTTAATTTAGGCTTACACTCAGAGCTCTTGTTGTTGAATCTTCATTCAAATCTGCTTCAAGGGACAATTCCCGAGAGTATTTTCGCTATGGAGAAGCTTGAATTTCTGATCCTGACTAATAATAAATTGACTGGCATTATTCCTGACTCAATTGGGAATTGCAAAGGCCTTTCAAACATTAGAATTGGGAATAACAAGCTCATAGGTGGCATCCCTAAAGCAATTGGAAATATCACTAGTCTTACTTATTTTGAAGCAGATAATAACACTCTTTCTGGAGAGATTGTCTCAGAATTCGCGCACTGTGCTAATCTCACTCTTCTTAATTTAGCTTCAAATGGATTTTCTGGTACTATTCCTCCTGAGTTTGGCCAGCTCAACAATCTGCAGGAGTTGATTGTTTCTGGAAATAATTTGTTTGGAGAGATTCCAACATCAGTTCTTAGGTGCAGAATCTCAACAAGCTTGACTTAAGTAACACAAATTCAATGGACCATACCGGGAGATATATGCAACACATCCAAGTTACAGTTCTTGCTGCTGGGACGACTCATGAAAGGGGAAATACCTCCGGGAGATGGTATGCATAAATGCTGATGCAATGGGGAGTATTATCT | |||||||||