| mature miRNA: AAGCTGCCAGCATGATCT species: Cichorium intybus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218979402|gb|FL676082.1|FL676082 CIRGL007F06 CiRG Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): AGTCTCAAGAAAACACGGCCCAAACAAACCCGCCCACCCGAACCTTCGTTAAGGTTTATAAATCGGGATGTTTTGGGAGGTCACTTGATATAGCGAAATTTAGCAGTTACCATGAGTTGCGAAGTGAACTCGCACAAATGTTTGGCCTTGAAGGCCAATTAGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTCGGTGATGACCCTTGGCCGGAGTTTGTGAGCAGTGTATATTGCATCAAGATACTATCGCCGCAGGAAGTGCAGCAGATGGGGAAACAAGGACTCGAGCTTCTTAACTCGGGTCCAATACGGACTCCAACGCGGCAAGAGTCTATGAATTTAAGCAATGGCGTTGCGTCAGTCAGTTCGTTAGAGTACTGACGCAACGGCATGCGGGATTCATAGTTTGTGCGACTTTTAGTCGCATTTCATCCCGACATGGGGATTTTAAGGTTTAGGTACTTATGAAAACAAAAACTGTAATTAATATGACCGAACTATCTATGTGCTTGGACAATATGGAAGACTTTGTATTATGTTTTTACTAGGAAGTTACCATAAGCCATGTATTTTAGCTACTTCTTTCACCTAATCTCATGATGGAGCCCTAGGGCAGGAGGTCTTATTTTGTG | |||||||||
gi|218985872|gb|FL674229.1|FL674229 CIRCN001E06 CiRC Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CACAAACAAACGGACCCAAAAAATAAAAGTAAAATTTTGGTAAAAGTGTCAAAAAAAAAAAATTTTCCCTCCGGTGGAAAATTTCCGGCCCTCCGGATATTCCCTTGTTTTTTTTGCCCCTTAATCCTGTTATTGGCCATTGCATGTGTATCAACCAAAGCACCCACTCAACTTGGTGTTCCTTGGACTTTTCACAGCTTCTTTAAGTCTCACTGTCGGTGTTAGCTGTGCCAACACAGATGGAAAGATTGTGCTGGAAGCTTTAGTTTTGACCTCTGCGGTTGTTACATCTTTGACTGTTTACACCTTCTGGGCTTCAAAGAAGGGAAAGGACTTTAGCTTCTTGGGACCGATTTTTATTCACCAGCCTTGTTATTCTCCTTGTGACTAGTTTCATGCAGGTGTTCTTTCCTCTGGGACCCACATCGAACGCGATATTTGGAGGATTTGGTGCGGTAATATTTTCAGGGTACATAATCTATGACACTGAGAACCTGATTAAAAGATTTACATATGATGAGTACATTTGGGCATCGGTGACTCTTTATCTGGACATTCTAAACCTCTTTTTGTCAATTCTACGGATGTTGAGACAAGGTGACAATTAGGTGCCGTGATGGGTCCCACAACCGGTTTGCAGGAATAACTCAATGAGTCAATGACGTTTGGTCATCTATCTTAATTTTCAAACTATAGTATATTCTATTTCTGGTATACACTCTCTACTCTCTGATACAGGTCATGTTTTGCTAGCAATTTGTAAGTAATGTTGGTGTCAAGTTGTATACATTTATAATCAAATTGATGTGTGTGATGATACTTCAAAAAA | |||||||||
gi|218976124|gb|FL671429.1|FL671429 CIFCN003B02 CiFC Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GGGTTAAAGGTTGTATTGGAGGCCTGATGGCCGAGGCGGTCAAATACTTGCCCCTTTCCGGTTAGCCCCAGCTACCTACCGGGTGATTCCCCGGTGACTATGGGCTGGAACAACTGCGGAAACTTTTCAGGCTGACCCCAAGAAACCCTTTTGCCCAAGAACCCGTGAAACTTGAGGTTGATTCCACTGCCCGGTGGGGCCATGCTGGGAGCTTTAGGTTGTGTCTTCCCTGAGCTTTTAGCCAGAAATGGCGTCAAGTTCGGTGAGCCAGTCTGGTTCAAGGCCGGAGCTCAAATCTTCAGTGAAGGTGGGCTTGACTATTTGGGCAACCGGAGTTTGGTTCATGCACAGAGCATCTTAGCCATTTGGGCTACCCAAGTCATCTTGATGGGTGCTGTTGAGGGTTACAGAATAGCCGGTGGGCCACTCGGTGAGTTCGTCGACCCACTTTACCCTGGTGGCAGCTTTGACCCGTTGGGGCTTGCTGATGACCCAGAGGCTTTCGCGGAGCTGAAGGTGAAGGAGATAAAGAATGGAAGGCTGGCCATGTTCTCAATGTTTGGATTCTTTGTTCAAGCCATTGTGACTGGTAAAGGACCGTTGGAGAACCTGGCTGACCACCTTGCAGATCCCGTTGCCAACAACGCTTGGTCCTATGCTACAAACTTTGTCCCCGGAAAGTAAACTTATAAATGTTAGTGAGAAAGTGTTTAGTTGAAATTAATTTGATGCAAATGCGTTTGTGAATTATTAATTGAGCAATAGTATATTGTCATCTCTTCGTTCCAAAAAAAAAACCTCGTGCCG | |||||||||
gi|218984530|gb|FL675337.1|FL675337 CIREN002F02 CiRE Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): AAAGGTATAATTTAATTTCCAATATGGCCCCTAATTATGTTGGGTCAAAACGCCATTCGTGGGTATCGAATTTGGTTCAAGGACCAGTCAACGGTTTTCCAACTTTGTCCTTTCCAGGGAAAGATAGTGGTGGGATTGAGCAAGAATCTTCAAGTTTGGAAGCTCAAAATCACGGGTTATTTAATTCAATCAATATCGATTCATCCGGGCTTTACTTCCCACAATCGATACCGATTTGTCCACAATGCCTTACTACATGCAAGACTCATCCGAGTTGTTGAACCCCACAGGACAAATTGACCAAACTACCCCTACCCCTAACCCTAATCGTAACCGGACATTTGTTAAGGTTTATAAATCGGGGTGTGTTGGGAGGTCATTAGACATGAGCCGATTCAACAGCTACCATGAGCTGCGTGAAGAATTGGGTCAAATGTTTGGGATCGAGGGTCTTCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGCGACGACCCTTGGGAGGCATTTGTAAATAGTGTCTGGTATATCAAGATACTTTCTCCCGAAGACGTGCAACAACTTGGGAAACAAGAAGTGGTTGAAAGAATCCACTCGGGACTTCCTCCATCGATGGGTTCACTTGATTTTTGATTT | |||||||||
gi|218987769|gb|FL672677.1|FL672677 CIRBL002G09 CiRB Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TTCGGGATTTACAAAACCGATTTAACGTCGATATACGATATCGGAGTCTCTAAAAGTAGCCAGGGTCCTCTAGCTACCGCACCAGCTCCCGCACTAAGCCCGCCTGCGGATGCTCCTGCAACCGGTGGGGCAACCACACTTCCGACCAACTCCTCCACCACAACCCCAACCACGACCACCACAACAGCACCCAATTCCACCATCCCCCAAAATTCTCCTACTGCACGGGTCAATGCATCAAAAAATGCTGGTAGCTTGAACATAATCGATATTAATTTTGTTGTTGTCATTTTTCTAGTTGTAGCTTCGATGTTGTAGATTGGTTTGGTAAGGTTTTTATGATTTATGGTTGTTCGGGTGTGTAATTGTTTTTGTTTTGTATGATAGAGATCTACAATTAAATGTAAAAGGTTTATGATATGATTTT | |||||||||
gi|218977220|gb|FL680894.1|FL680894 CIRQL003C11 CiRQ Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): ATCAACCAAAAGCCACCCCACTCAACTTTGGGTGTTCCTTGGACTCTTCACAGTTCTTTAAGTCTCACCTGTCGGTGTAAGCTGTGCCAACACAGATGGAAAGATTGTGCTGGAAGCTTTAGTTTTGACATCTGCAGTGGTTACATCTTTGACTGTTTACACTTTCTGGGCTTCAAAGAAGGGAAAGGACTTTAGCTTTTTGGGACCGATTTTATTCACCAGCCTTGTTATTCTCCTTGTGACTAGTTTCATGCAGGTGTTCTTTCCTCTGGGACCCACATCGAACGCGATATTTGGAGGATTTGGCGCGGTATTGTTTTCTGGGTACATAATCTATGACACTGAGAACCTGATTAAAAGATTTACATATGACGAGTACATTTGGGCATCGGTGACTCTTTATCTGGACATACTAAACCTCTTTTTGTCAATTCTACGGATGCTGAGACAAGGTGACAATTAGGTGCCGTGATGGGTCCCACAACCGGTTTGCAGGAATAACTCAATGAGTCAATGACGTTTGGTCATCTATCTTAATTTTCAAACTATAGTATATTCTATTTCTGGTATACACTCTTACTCTCTGATACAGGTCATGTTTTGCTAGCAATTTGTAAGTAATGTTGGTGTCAAGTTGTATACATTTATAATCAAATTGATGTGTGTGAT | |||||||||
gi|218973028|gb|FL674731.1|FL674731 CIREL003C07 CiRE Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GCATGTGTATCAACAAAAGCACCCACTCAACTTGGTGTTCCTTGGACTCTTCACAGCTTCTTTAAGTCTCACTGTCGGTGTAAGCTGTGCCAACACAGATGGAAAGATTGTGCTGGAAGCTTTAGTTTTGACCTCTGCGGTTGTTACATCTTTGACTGTTTACACCTTCTGGGCTTCAAAGAAGGGAAAGGACTTTAGCTTCTTGGGACCGATTTTATTCACCAGCCTTGTTATTCTCCTTGTGACTAGTTTCATGCAGGTGTTCTTTCCTCTGGGACCCACATCGAACGCGATATTTGGAGGATTTGGTGCGGTAATATTTTCAGGGTACATAATCTATGACACTGAGAACCTGATTAAAAGATTTACATATGATGAGTACATTTGGGCATCAGTGACTCTTTATCTGGACATTCTAAACCTCTTTTTGTCAATTCTACGGATGCTGAGACAAGGTGACAATTAGGTGCCGTGATGGGTCCCACAACCGGTTTGCAGGAATAACTCAATGAGTCAATGACGTTTGGTCATCTATCTTAATTTTCAAACTATAGTATATTCTATTTCTGGTATACACTCTCTACTCTCTGATACAGGTCATGTTTTGCTAGCAATTTGTAAGTAATGTTGGTGTCAAGTTGTATACATTTATAATCAAATTGATGTGTGTGATATACTTC | |||||||||
gi|218977609|gb|FL677543.1|FL677543 CIRKN004G01 CiRK Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): AAAAGAGAGGGAATGGAGGGAATAACCGGATAAGCAGGGGAAACCATTTGGGGGATATCCGGAAGGGAAGGAATTTGCGGATAAGGGGTTAACCACGCGGTTTGGCTAGGTCAAAGGTTCCATCACATTCCTCCGGGAATTCGGCCTCCGTATCCTGTCTCTTGCCTTCATCCTGTTATGCCATTGCAGGGGAATCAACAAACGCACCCACTCAACTGGGTGTTCCGTGAACTTTTCACAGTTTCTTAAGTCTCACTGTCGGTGTAAGCTGTGCCAACACAGATGGAAAGATTGTGCTGGAAGCTTTAGTTTTGACTTCTGCGGTTGTTACATCTTTGACTGTTTACACTTTCTGGGCTTCAAAGAAGGGAAAGAACTTTAGCTTCTTGGGACCGATTTTATTCACCACGCCTTGTTATTCTCCTTGTGACTAGTTTCATGCAGGTGTTCTTTCTTCTGGGACCCACATCGAACGCGATATTTGGAGGATTTGGTGCGGTAATATTTTCAGGGTACATAATCTATGACACTGAGAACCTGATTAAAAGATTTACATATGATGAGTACATTTGGGCATCGGTGACTCTTTATCTGGACATTCTAAACCTCTTTTTGTCAATTCTACGGATGTTGAGACAAGGTGACAATTAGGTGCCGTGATGGGTCCCACAACCGGTTTGCAGGAATAACTCAATGAGTCAATGACGTTTGGTCATCTATCTTAATTTTCAAACTATAGTATATTCTATTTCTGGTATACACTCTCTACTCTCTGATACAGGTCATGTTTTGCTAGCAATTTGTAAGTTGTTGGTGTCAAGTTGTATACATTTATAATCAAATTGATGTGTGTGATATACTTCCAAAAAACAAA | |||||||||
gi|218981966|gb|FL671071.1|FL671071 CIFCL008A12 CiFC Cichorium intybus cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GATGTATTGCAGCCTGGAAAGAATATGCTGGCTGCTGGATACTGCATGTATGGTAGTTCTTGCACGCTTGTGTTAAGCACTGGATCTGGTGTGAATGGATTTACTCTTGATCCATCTCTGGGGGAGTTTATACTTACCCACCCGGACATTAAGATCCCAAAGAAAGGCAAGATTTATTCAGTTAATGAAGGAAATGCCAAGAACTGGGATGGTCCCACTGCAAAATTTGTGGAAAAATGCAAGTTCCCCACAGACGGTTCATCCGCAAAATCATTAAGATATATTGGAAGTATGGTTGCTGATGTCCACCGAACCTTACTTTACGGGGGTATATTTTTGTACCCTGCTGATAAGAAGAGCCCGAGCGGGAAATTAAGGGTTCTCTATGAAGTGTTCCCGATGTCTTTCTTAATGGAACAAGCTGGCGGACAGTCATTTACCGGAAAGGAACGGGCACTTGACTTGGTACCAAAGAAGATACATGAACGGTCTCCGATATTCCTTGGAAGCTATGATGACGTGGAAGAAATCAAGGCACTTTATGCAGCTGAAGAGAAGGCAAATTAAACTTATTTACATGTTGTTGTTGTTGTTGATGTGCAGTTACTTTCCTTTAATATTTGTAATGAAAAAAGCTACATTTTATTTCATGTAACCTGTCTTAAATGATAAAGAGTAAAGTAATATATTATGATTTACCTTCC | |||||||||