| mature miRNA: AAGCTGTTCGACGAAATGCCT species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|254647676|gb|FS408194.1|FS408194 FS408194 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR002 AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): GGTCAATAATGGAGTCCAGACCAAAATCACTGTACCTTTTTATGCTCTTCTATTGCTTATCATCAGCAATAATAACTGCGCAATCTTCCTTTCCCAAAGAAGCCCTGCCAACAAAATCAGGTTACCTCACAGTTAACTCAACAACTGGTTCAGCCATTTTTTACACTTTCTATGAAGCTCAAAAATCCAGCACAAAACTCAATCTTTCTGAAACCCCAATTCTTATTTGGCTCCAAGGTGGTCCTGGTTGCTCTTCTATGCTTGGAAACTTCTATGAACTTGGTCCTTACCGTGTCTCATCTTCTTTCAGGCATAACGTCGAACACCTTTCGCTCGAACCTAATTCTGGTTCTTGGAATCGAATATTTGGGCTCCTTTTTCTTGATAATCCTATTGGAACTGGATTTAGTATTGCTTCAAGTCCAGATGAGATACCAAGAAACTTACACGATGTTGCTAAACACCTTTTTAAAGCTACAAGGGAGTTTATTGCATTAGATCCTTTGTTTATGACGCGTCCGATTTACTTAACTGGTGAAAGTTATGCTGGTAAGTATGTG | |||||||||
gi|156685550|gb|AM836086.1|AM836086 AM836086 seedling library, SL Nicotiana tabacum cDNA clone nt002090041, mRNA sequence AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): TGCGGCCGCTATGAATCAATTGATAAATATTTACAGTACTACAGTACACTGAAGCACTAAATTAACTAGTAAGAAAACATCAGCAGACTGCAACAAGTACACGAACATGAACCACACAGTTCAAAATAAAAACTGTGTTCGATATTTTGAAAAGATACTAATCCAACCTGCTTCTTGAAATTTTGTCAGTAGTAGTAGCAAATTTGATTTCTTCTTATCAGTTACAACAACACTTCTGCCTGTTCCAGTGGTCCTTCATTTCACAAGAAATCCGTCAAGCTTTAGCTCTTGGCAAAAGGACGGGGATTTTTAAGGTTTGTCGCCTTCCTTAGTTGATTTTGAGCTGCCACCAACCAACCGTTTAGCAATTCTTCTTTGTTTTAGTCTGTTTTGTTTCGAGCAAGAGTCTGCTTCACCTGGCTCATTGGCATTTTGTCGAACATCTTGTGGTTCCAGCGGCCGCATGAGGGGATCCTCTAGAGTCGACGGCATGCCCTGCTTTAATGAGATATGCGAGACGCCTATGATCGCATGATATTTGCTTTCAATTCTGTTGTGCACGTTGTAAAA | |||||||||
gi|190750424|gb|FG150984.1|FG150984 AGN_RNC111xg19f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): CTCTTCTCCGATCAATATCTACCTCATTTGGTACGGCAAGTGGGCCCCATCACAGCAACTCCTCATTAAAGACTTCCTTCTCTCCGTTTCCACTTTCAACCACCGCGCTGCTCCTTCTCCTTCCGTCGCGGAGTGGTGGAGCACAGTGTCCTTGTACACTGACCAGACCGGAGCTAACATCTCCCGCTCCGTACTCATCGCCGGGGAATACTCTGACAATAAGTATTCTCAGGGGAAAAACCTTAATCGTCTCTCCATTCAAGACGTCATCGCCGAAGCCGTTCGATCAAAACCGTTCACCGTCGATCATAAAAAAGGGATCTACCTCGTGTTAACTTCAGTCGACGTTACGATGCAGGACTTTTGTCGAGCAGTTTGTGGGTTTCACTACTTCACCTTCCCATCCAAAGTGGGTTACACGCTTCCGTACGCTTGGGTCGGCAACTCCGGGAAGCAATGTCCCGAAGTTTGTGCGTATCCATTCCCGGTGCCGGGGTACATGGGAAGAAGTGGGCCCGGGGCACTGAAATCACCAAACGGAGACGTCCGAATAGACGGCATGATTAGCGTAATAAGTCACGAACTAGCTGAACTATCATCAAATCCGTTAGTGAATGCGTGGTATGCAGGGGAAGATCCCGTTGCGCCGACCGAAATTGGGGATTTGTGTGAGGATTGTATGG | |||||||||
gi|254617103|gb|FS415150.1|FS415150 FS415150 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR003 AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): GGACTGCTTGCTTTGCTCCCTTTCCTCTCCACAGTTTCACGCTTCTCTTCACTTTATCTCTCCAATTATTTGAATTTCCAAAAACCTCTCCCAAATATTTTTCGCTCTCATACGCATTTTCTCGAACATCTTCCAGTTGGTAAAAATGCCGGAGATTCAGTTGGGCGCCCATACATTCAGAAACCAGGGAGTGGAAATAGCAAGGTTTCACATGCACGACTGGCTTATTCTTTTTCTACTTGTGGTGATCGATATAGTTTTAAATGTGATAGAACCGTTTCACCGTTTTGTTGGATCTGACATGATGACAGATTTAAGATACCCTTTGAAAGACAATACCATTCCCTTTTGGGCTGTTCCGATTATTGCCATAATCTTACCGTTACTGGTCATACTTGTCTTTTACTTCATCAGAAAGGATGTCTACGATGTGCATCAAGCTATATTAGGATTGCTGTATTCTGTACTAATCACCTCAGTTCTTACTGATGCAATCAAAGATGCCGTTGGTCGACCCCGTCCAGACTTCTTTTGGCGGTGTTTCCCTGATGGAAAAGGGGTGTTTGATACAATCACAAGCAATGTCNAATGTACTGGCT | |||||||||
gi|190756084|gb|FG174245.1|FG174245 AGN_RNC124xe24f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): AGACAGTCGGTCCGGATTCCCGGGATAAATTTTCATTTTCAGCTGAAAAAGGCAGAAACCAAGAAAGAAAGTTCAACTCCTAGTTGAAAGATTATTTCTTCTACAGCAACAAAACATGCTGAAATATAGCTATGGAAAAGTGGTTGCTTCGCATATATTGGTTGCAAGTCTTGTGGGAATTATATCTGTTTTCGCCATGCATCTTCACAAATCTTCTAAATCTAAATCCAAATCTTCCAAAGTTGATGATAATCAAATAAATTTCAATCCCCTTACTCCTATTTTGGACAGAACTGAATCTGGTCGTGCTGGTAAACTCGAAAAGTTTTCCCATTATGTTGCAAGGCAATTGGGGTTTAAAGATGAAAGTGAGTGTCCTCGCTTAGGAGAGCTAGTACAGGAATATTTGAGGAGATCCAAAGGGTGTGATAATACCATATTTGAATACTTTGCTAATGAAGAAGATGCTGAATCTTTGTATATAAAGTTGGAGAATGAATTAGAGAGGTGTATTCTTGCTTATTTTGCTTTCCATTGGAGTAAAGCTTCTGTATTCATTAGCCAGGTGTTAAGTGTTGATTCTGATCAAAAAAGACTCAAGGATTTGGTGCTGGCAGCTACAAGGAAACAGAGGTTCGAGAAGATAACAAAGGACCTAAAAGTGACAAGGGTATTTTCAACGCTGGTAGAGGAGATGAAAGCAATTGGAACAGTATCATCAAATGGGGACTCCAAATGTACAGACGTTATGGTCCCTGTGGCTCACAGTCAACGAAGTCCAGTGCTCCTACTCATGGGTGGTGGCATGGGTGCTGGCAAATCCACTGTCCTCAAAGAAATCCTAAACAGTCATTTTGTCGAGCAGCTGTAAATGCAGTATGGTAAAGCAGATGCTTTC | |||||||||
gi|190772408|gb|FG133108.1|FG133108 AGN_ELP018xk24f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): TAGAGTTATACTAAACCTATTTCTCTTATCCCTTTTGTTTCAGTTTGGATTTAACTATGCATCTTCCCCTACAGCACAAACTCTTGAGCTCAAAAACCCAAACTACTTCAACCCAAAGCTTCCCCCAAAAACACTCTCTTCCTCAAAAAAGTTCGAGGGATCTTCAGACCTGGTAAATCTCCGTTACCATATGGGTCCAGTTCTCTCTTCTCCGATCAATATCTACCTCATTTGGTATGGTAAGTGGGCCCCATCACAGCAACTCCTCATTAAAGATTTCCTCCTATCTGTCTCCACCTTCAACCACCGTGCTGCTCCTTCACCTTCCGTCGCGGAGTGGTGGAGCACTGTATCTCTGTACACTGACCAAACCGGAGCTAATATCTCCCGCTCCGTACTCATCGCCGGAGAATACTCTGACTATAAGTATTCTCAGGGGAAAAACCTTAATCGCCTCTCCATTCAAGATGTCATTGCTGAAGCCGTCCGATCAAAACCATTCACCGTCGATCATAAAAAAGGGATCTACCTCGTGTTAACTTCGGTCGATGTTACGATGCAGGACTTTTGTCGAGCAGTTTGTGGGTTTCACTACTTCACCTTCGCATCGAAAGTTGGTTACACATTGCCATACGCTTGGGTCGGAAACTCCGGGAAACAATGTCCCGAAGTTTGTGCTTACCCGTTTGCCGTGCCGGGATACATGGGAGAGTGGGCCCGGGGCATTGAAGTCACCAAACCGGAGACGTCGAGTGACGGATGATAAGCGTGAATAGGTCACGACTAGCTGACTTTCATCAATCCGTTAGTGAATGCTTGTATGCTGGGAGATCGTTGCCCGACGGAAATCGAAATTTTGTGAGGATGTATGTACG | |||||||||
gi|190875587|gb|FG166010.1|FG166010 AGN_RNC010xd22f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): CGGTCCGGATTCCCGGGATGTTATACTAAACCTTTTTCTCTTATTCCTTTTGTTTCAGTTTCGATCTAACAATGCTTCTTCCCCTACAGCACAAACTCTTGAGCTGCAAAATCCTAACTACTTCAACCCAAAGCTGCCGCCTATGACACTCTCTTCCTCAAAAAAGTTCGAGGGATCATCAGACCTGGTAAACCTCCGTTACCATATGGGTCCAGTTCTCGCTTCTCCGATCAATATCTACCTCATTTGGTACGGCAAGTGGGCCCCATCACAGCAACTCCTCATTAAAGACTTCCTTCTCTCCGTTTCCACTTTCAACCACCGCGCTGCTCCTTCTCCTTCCGTCGCGGAGTGGTGGAGCACAGTGTCCTTGTACACTGACCAGACCGGAGCTAACATCTCCCGCTCCGTACTCATCGCCGGGGAATACTCTGACAATAAGTATTCTCAGGGGAAAAACCTTAATCGTCTCTCCATTCAAGACGTCATCGCCGAAGCCGTTCGATCAAAACCGTTCACCGTCGATCATAAAAAAGGGATCTACCTCGTGTTAACTTCAGTCGACGTTACGATGCAGGACTTTTGTCGAGCAGTTTGTGGGTTTCACTACTTCACCTTCGCATCGAAAGTGGGTTACACGCTTCCGTACGCTTGGGTCGGCAACTCCGGGAAGCAATGTCCCGAAGTTTGTGCGTATCCATTCGCGGTGCCGGGGTACATGGGAGGAGTGGGCCCGGGGCACTGAAATCACCAAACGGAGACGTCGGAGTAGACGGCATGATTAGCGTAATAGTCACGACTAGCTGAGCTATCATCAAATCCGTTAGTGAATGGTGGTATGCAGGGAGATCCCGTTGCGCGACGAATTGGGGATTGTGTG | |||||||||
gi|190757436|gb|FG142597.1|FG142597 AGN_RPC021xo15f1.ab1 AGN_RPC Nicotiana tabacum cDNA 5', mRNA sequence AAGCTGTTCGACGAAATGCCT EST sequence (targeted fragment marked with yellow): CGGATTCCCGGGATGAGAAAATAATAAAAAGATAGAATGATAGAACCTGGTTCAAGAACGGATAACTTGATATCAAATTAAATTTTCTGCTCGAGTATGCTTGTCGTAAGACTTGAATTATGAAAATAGAACGAACAAAAAAATTTCCACTATTTCTTGAATCAATACGCTGAACTCTGAAATCTGAAACTCCACGATAATGCTTGATCTTTGACTATTGCAGAATGGAGGCATGAATAATAAATTGAAGAACAAAGTATAAAAATATAATATAGTGCACACAAAATTTTTACTTTGCTCGAGAAAGTTATGCTCGAAAAAGTTGTGGTCCACTATCTCAAATTTGTGTTCTCTTTTTATGCAAACTTCCCATGTATTGTTTCACTTTATAGTTTTTATTTTTAATTTTTATTTTATTTTAGGTATAACCAAAAAATGGGCCCTCATAAATGTGGGGCCTAAAACAATTGTTTTACCCGCTTTATGGACGGGTCGCCCTTGCCTATCCTGATAGCACCAATGACTGATCTACTATAAATCACACGGAAATAACTTGAACGTACCAAACAGCAATTATTGACTAATATTGGTGGGAGAATGTAGGAAACAGAGGTTCGAGAAGATAACAAAGGACCTAAAAGTGACAAGGGTATTTTCAACGCTGGTAGAGGAGATGAAGCAATTGGAACAGTATCATCAAATGGGGACTCCAAATGTACAGACGTTATGGTCCCTGTGGCTCACAGTCAACGAAGTCCAGTGCTCTACTCATGGGTGGTGCATGGGTGCTGGCAAATCCACTGTCTCAAGACATCTTAAACAGTCATTTGGTCGAGCAGCTGTAATGCAGTATGTAGAGCGATGCTTTCAGGAACTGATGTATTACGAGCCTTAGCTCAGAGTCATCATCCGACTGCT | |||||||||