miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAGGTGTTCGACGGAATGCCT
species: Raphanus raphanistrum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|154094525|gb|EV527498.1|EV527498 RR1AY90TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
|..|||||||||.|||||||
GTTTACAAGCTGCTTTACGGA

EST sequence (targeted fragment marked with yellow):
GTTTACTTGAATCTCAAATAAATCTTAGGCATTTCGTCGAACATTTGGAAGACGCCTTGTTCTATATAAACCTCTCTCTCTCTGTCTCTCTCCGTTGTTACCACAATCGAAGCCTTGAAATGGAAAAGCTTATTGAGAATCATCAGTTTGCGACTCATGCTATAGCAGCCTCGGCATCTGTCTCGCTAGGAACTGCTCTAGCTTACCCTCTAGATACCATCAAAACCATCATCCAGGTTGGCTCAGGACCCAGTAAGAAACTGAGCCCATCTCAAGTCGTCAACAGAGTTTTCCGCTTCTCTGGCTATTCAGGTTTGTATAGTGGTCTTGGACGGTTAACTCTAGGAAGAATATCAGGTGTTGGTGCAAGGTTCGGTGTCTATGAGATTCTCACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGCAAGTCAGTGAAGCTGTTCTAGCTGGTATGGTGGGAGGTGCAGCAGAAACAGTGATGACTTCCCCCTTTGAGCTAATCAAAGTCCGACAACAAGTAACCGCTGCTTCACGGGCTCCAAACGCTGCAGCCGCTGCGGAGACCGCACCTGTAGTTTCACCAATGATCACAAAACTTCTAAGAAGATACACTCTCGATGTGAAGTCATTGACACAAACAGTCAGTCTCTTGTCCGTCTTGAACCATAAACACCCAAACATGGCAGCCGCTTTGCGAGAGTACCCTTGGATGATGACTGGA



gi|167474103|gb|FD959325.1|FD959325 RR1G854JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|||||||| |.||| |||
TTTCACAAGCTACTTTAAGGA

EST sequence (targeted fragment marked with yellow):
GGGACACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACGACTGTTCTCAAGAAGGAGAGTGATAGTTTGACTGATCGTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAAGTGACGGGGGATTGAATTTTGTCTGAAGTCAACGAGATTTACGATCATGCGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTCTTTGTCAGGAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGATTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATGTTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTTAACTGCGTTTTTACACTAAAAAAAAAAAAAAAAA



gi|154170098|gb|EV541372.1|EV541372 RR2AQ04JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|||||||| |.||| |||
TTTCACAAGCTACTTTAAGGA

EST sequence (targeted fragment marked with yellow):
CTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACCGCCGTAGCATCGGGTTTTTTCGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGAGAGCGATAGTTTGACGGATCGTATGAATAGAATCAAGAGCGATTTTTTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTGCTTTTCGGTGACGATAAAAAGTGACGGGGGATTGAATTTGGTTTGAAGTGAACGAGGTTACGATCATGCGATGTTGTATTAATTCTATATAGATGTCTCTGTCTGTAAAGGATGTGTCTTTGTCAGGAAATTAGCGAATGAATAAGTAGGGTTGCAAGGTGTTGTGATTCAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGGGCTTCGATGTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTT



gi|154179115|gb|EV548455.1|EV548455 RR3AA21TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.||||||||..||||||
GTCTACAAGCTGTTTTACGGT

EST sequence (targeted fragment marked with yellow):
GGACTTTTCAAGTTTACAAATGAAATTTACTTTTGGACTGTTTTATTATGATCATATACCAATAGGCTAGTTACAAAAAAAAAAAATACCAATAGGCTACCAGAATAAATATAATTTAGAATGTTGTGTTCTATATATACTTTGATAAAAAATAAGATTTATATTTTCAATGTACTTTTATATTGGCATTTTGTCGAACATCTGGTGTGCATTGTAGATTTACATTTGATTTTCTTCTTCTTGGCAGATGTGGCGGTTATGAATTCAGCTACTTCGAAGGATCCGAAGATTTTGAACAAGGAGAAAGTTAATGAGATGGAGCAAGCAAACATGGGTCATCGCCACATTTCTTGGAAGCATTATGGTCAAACTTCTGTGTCTTTCGTGTAATAACGAGAAGTTGCTTAACGACGATGCTGCTCTTTAGGATGTCGGAGTCCGGAACAAGTCTCAGCATGAATACAGATCTCATGTGTTCCATATGTGACGAAGAAGGGTCCGGGAAGACACTCGAAGAGGAAGAAGCATCATCTCTTTTGTTCACTCCACAAGATTTGTTAGATAGTAGCGGTAAGTTGTCGACCAAACATAGTTATGTCGCTCAACACTTGATTGATGTCGAGATGTTCATCAACGAACAGGGCACTGTGATTACATAGCTTCATATCCCCTTATCGTGTAGCACAATACGAAAGATGTTCTGCTTTTGA



gi|167480555|gb|FD963757.1|FD963757 RR1GI76TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
|| |||||||| ..|||.|||
TTGCACAAGCTATTTTATGGA

EST sequence (targeted fragment marked with yellow):
GGAGAAGAACTAATACGTACATACACATTTGTACATACTAACCACACACACAGATGTATATATAACCTATGATATATTTAGGCAGAATAAATCCTCTGTTTTATACAACAATGACAAAAACACTTGAGATTGATATCAGATCTGCAGAGGGGCTCAAGATAAACCGGAGACTTATCAAGAAGAAAAAGACTTTCGCGGTCGCAAAGATCGGCGATAAGTTTCGAAAAACGTATCTGGACGACTCCGGAGGAAGCAATCCAACGTGGAACTTCAAGTCGGAGATGCCAATGAAAGGGAGTGTAAAGTTCATCTCCATTGAGGTATTTTATCGAACACGTTGTGGGCGTGATAAGAAGATCGGAGAAGCTCCAATCCCGGCGACGGATTTCATGGAAACGACAATGTTCATGGCTCCTTCTTCTTCTTCGTCTGAACCGCCGTCGATTGATGGGTATGGTGGTCGGATTGTAACTGGAGTTCCGGTTTGGCGTTTGACATCATAAACTGGTGTTTGGTCCCCACCGCTTGCGCTGTAATACTTCATGCCCGAGGAAGAAGACGTGTTACTACAGGAGTAACTTTTTTTGGTGTGTGTTTCAACGGCCGACATACACTGGTGTTTGGCTTGCACGTCTGTCCTAAGATTTTTCCCAATTCGGAATTGAGAAGAAAGATGTGATTAGTGTTTTTTCTATACAAGAAAAATGAGTTTGTTGTATGAATTGATACGAATTTC



gi|154262448|gb|EV573419.1|EV573419 RR4B085JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|||||||| |.||| |||
TTTCACAAGCTACTTTAAGGA

EST sequence (targeted fragment marked with yellow):
GGGACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACCGCCGTAGCATCGGGTTTTTTCGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATCGTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTTACGATAAAAAGTGACGGGGGATTGAATTTTGTCTGAAGTCAACGAGATTTACGATCATGCGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGTGTCTTTGTCAGGAATTTAGCGAATGAATAAGTAAGGTTGCAAGGCGTTGTGATTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATGTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTTAACTGCGTTTTTACACTACTGGGTATATATGTCTTAAGGTCAAAACCCAACTGCAATAAGCATATTTAAATTCCGGAATTGGAAACTAGC



gi|154183246|gb|EV552586.1|EV552586 RR3BJ34TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|.|||||||..|||||||
TTTCGCAAGCTGTTTTACGGA

EST sequence (targeted fragment marked with yellow):
GGATCTTTTAGCACTCTCCATCTGACCACACTTAGCATAAGCATCGATGATAGAGCAAGAAAGCACCACGTTCGAGAGAAACCCAGCAACAAGAACCTGCCCGTGAGCTCCCCTGCTGAGCTGGATCTCTCTCGATTTCACACAAGCGGTTAAAACCCCAGCGAAGCTGAACTCGTTGCACTTGATCCCAGATCTCCTCAGCTCTCTATAAAACCACAGAGCCTCGTTCAGATCCCCGCTCTTAGCGTAACCAATCACCATCGTGTTCCACGAGACGACATCCCTCTCAGGCATACCGTCGAACACGGCTCTTGCACGAGTCAACATCCCCGATTTGACGTACCCGGAGATCATACTGTTCCACGAGTACAGGTTTCTGAAAGGCATTTTGTCGAACGCTTTGCGTGCGTCGACGTGTTTACCGCATTTCATGTACATTCCGATCAAGTGATTGGAGAGAAGCGTGCTGGGCGTCTTCTTGAATCCGGTGATCTTGAGGTGGCGATGGATCCATCTGCCTTGTTTTAAGGAGCCTGTGTCTCCGCAGCGCTGGAGAAGGGACGCGAGGACTTGGAAGGGTAAGCGAATCCCTTGTTTGGTCAGGGACTCGAGGCGGGAGACCGATTGGGAGAGCTCTTCTTTGAGAAACGATCGAGGGAGGGTGATTATGGGGGTGACGTTTCGTAGGGTTACTGATGGGCATTGGAGGGAGAAACCACCATGGGAGGAGTAGACTTGACTCCTTGAAATCTCCACCGGCGAATAGAGGTCT



gi|154165784|gb|EV537058.1|EV537058 RR2AQ04TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|||||||| |.||| |||
TTTCACAAGCTACTTTAAGGA

EST sequence (targeted fragment marked with yellow):
GGACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACCGCCGTAGCATCGGGTTTTTTCGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGAGAGCGATAGTTTGACGGATCGTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTGCTTTTCGGTGACGATAAAAAGTGACGGGGGATTGAATTTGGTTTGAAGTGAACGAGGTTACGATCATGCGATGTTGTATTAATTCTATATAGATGTCTCTGTCTGTAAAGGATGTGTCTTTGTCAGGAAATTAGCGAATGAATAAGTAGGGTTGCAAGGTGTTGTGATTCAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGGGCTTCGATGTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTT



gi|158637302|gb|EX747193.1|EX747193 RR1BX53TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|||||||| |.||| |||
TTTCACAAGCTACTTTAAGGA

EST sequence (targeted fragment marked with yellow):
GGGACACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATCGTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAAGTGACGGGGGATTGAATTTTGTCTGAAGTCAACGAGATTTACGATCATGCGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTCTTTGTCAGGAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGATTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATGTTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTTAACTGCGTTTTTAC



gi|158653914|gb|EX763805.1|EX763805 RR3C816TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|.|||||||||||.|| |
TTTCGCAAGCTGCCTTGCGTA

EST sequence (targeted fragment marked with yellow):
GGAACGCCGAACAAAGAGTAAACGAAAACACAAAAGCCCTAATATTTGTGTGTGTAGACTCTCTCTCTCTTTCTCTCCTTGAAAGCTTTCGTAAATCCTTGCGGCCATGGCGCACGGAGGCTATGCCAAGAGAAGGGTTTCAGAACCCAATCAGGCGTCGGGAAGCAGCAGCAGGAGGTCGAAAGCATTACGCGTGGAGAAGAAACCTAAGATCGTCTCTCTCAAGAACCAGATGCGTTCCGTCGAACGCTTTCTTCGTAAAGATTTGCCTCCTGAAGTAAAAGAGACTCTTAAACAGAAGTTGGAGTATTTGAAGAAGCAGCAAGATGACCATACACGTCTTGCTGTTGAACGTAAAATATTCCTCAGGAACAGAAAGATTAAGTTCTTTGAGAGGAGAAAGATTGAAAGGAGCATCAGGCGGCTTGAGAAGCTACAGCGAACTTCATCTGCTCATGTGGTGGGAGATGCAGATGTTGCTGAGCAACTCAGTAAACTCAAGGAAGATCTTGAATATGTTAGGTTCTTCCCCAAAAATGAGAAGTATGTATCTCTGTTTACTGGAGCTGAGGACTCAGAAGTGATTGAGCGAAGAAGTAAGATGCGGAAGCAGATCAAAGCCAATATTATTGTTGCTGCTGCTAGTGGGAAAGAGTTGGAAGAGACAGGAGTGAAGATGATGGTCTTCTGGACCTTAGTGATGATGATTCTTTGACAAAGGGAGCTCAAGCGATGAAGCAGACGCAGATGATGAATTGACCGATAAAGCACAAAGAGCTGCTTCTAGTAGACACATCCGGCATGTCTAGTGATGAAGGACAGAAACAAGCTCTG



gi|167491046|gb|FD970856.1|FD970856 RR2G788TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
|| |||||||||.|||||||
GTCGACAAGCTGCTTTACGGA

EST sequence (targeted fragment marked with yellow):
TTTTTCTTTAGGGTACTTTTTTCTTTGTCAAACGTCATCGTCTGTCTGTCTCTGATTTTGTTGCTTCTCTAACGTAGTAGAACAGTGTTGATGTTTGGGTTGAAGATGAGGTTTTTGTTTGTTTGAATCTCAAATAAATCTTAGGCATTTCGTCGAACAGCTGGACGACGCCTTGTTCTATACAAACCTCTCTCTCTCTCTCGCGTTGTTACCACAATCGAAGCCTTGAAATGGAAAAGCTAATTGAGAATCATCAGTTTGCGACTCATGCTATAGCAGCCTCTGCCTCTGTCTCGCTTGGAACTGCTATAGCTTACCCTCTAGATACCATCAAAACCATCATCCAGGTTGGTTCAGGACCCAGTAAGAAACTAAGCCCATCTCAAGTCGTCAACAGAGTTTTCCGCTTCTCTGGCTATTCAGGTTTGTACAGTGGTCTTGGATGGTTAACTCTAGGAAGAATATCAGGTGTTGGTGCAAGGTTTGGTGTCTATGAGATTCTCACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGCAAGTCAGCGAAGCTGTTCTGGCGGGGATGGTGGGAGGTGCAGCAGAAACAGTGATGACTTCTCCCTTTGAGCTAATCAAAGTCCGACAACAAGTAACCGCTGCTTCACGTGCTCCAAACGCTGCAGCTGCTGCAGAAACCGCACCGGTTGTTTCACCAATGATCAACAACTGCTAAGAGATACACTCTCGATGTTAAGTCATTAACACAAACCGTCAGTCTCTTGTCCGTCTTGAACATAAACACCCAAACATGGCAGC



gi|154257625|gb|EV568648.1|EV568648 RR4AZ54TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||||||||||||.||.| ||
GTCCACAAGCTGCTTTGCAGA

EST sequence (targeted fragment marked with yellow):
GGTGAAGTGTGTTGAGTGTTGCGAGAAAGGGTATAAGATCCCGCTCGGTGTTTTGGGCAAAGAAAGCGTCGATGATGATGAGGTTCAGTCAGACGTTTCGTCGAACACCTGTGGTGCATTAAAGGTTGAGACTTTAAACCCAGAGTCTAAGAGTGAAAGCAAGTTTTTTTGTTATGGAGAGGAGGAGAAGGAGAGGCTGAACAGAATCCTAAGCTATTACGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACCAAAGCAGCAGACCCGGCTGCCAACCGCTACATTCTCTCCTTCAATGCCAACACTGTGATTACACTCGACGGGAAAGACTTTGTGAAGTGTGAGGTTGTGGGACAGAGCTTCATGCTTCATCAGATCCGCAAAATGATTGGACTTGCTGTTGCTGTCATGAGGAACTATGCGCCTGAATCAGTGATCCAAACCGCTTTCAAGAAGGATGTGAGGATAGTTGTACCGATGGCGCCAGAAGTTGGACTATACCTTGATGAATGCTTCTTCACGTCTTATAACAAAAGGTTTAAAGTCACTCATGAGGAAGTGTCAATGGAAGAATACAAGGAAGTAGCTGAAGAATTCAAATGGAAGCATGTTTACTCTCATATTGGCTCAGCGGAAGAAAAAGATGGGATTGTGGCGATTTGGTTGCATTCATTGAACGAAAGAAACTATCCAGACCCTACGTGTTGCTGAACACAAACCAGATGAAGTCATCGTCTATAAGAAGATCGATGCAGCCTCTGAAGAAAGATCCACGAAGAGGAAGTTGCTGTGAAAGAGACACAAATGGTGCTGGAGAGCTACTCGTCGACAGTAAGTAAATGATGAAACTCTGA



gi|154180952|gb|EV550292.1|EV550292 RR3AU25TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.||||||||..||||||
GTCTACAAGCTGTTTTACGGT

EST sequence (targeted fragment marked with yellow):
GGAATGTACTTTTATATTGGCATTTTGTCGAACATCTGGTGTGCATTGTAGATTTACATTTGATTTTCTTCTTCTTGGCAGATGTGGCGGTTATGAATTCAGCTACTTCGAAGGATCCGAAGATTTTGAACAAGGAGAAAGTTAATGAGATGGAGCAAGCAAACATGGGTCATCGCCACATTTCTTGGAAGCATTATGGTCAAACTTCTGTGTCTTTCGTGTAATAACGAGAAGTTGCTTGACGACGATGCTGCTCTTTAGGATGTCGGAGTCCGGAACAAGTCTCAGCATGAATACAGATCTCATGTGTTCCATATGTGACGAAGAAGGGTCCGGGAAGACACTCGAAGAGGAAGAAGCATCATCTCTTTTGTTCACTCCACAAGATTTGTTAGATAGTAGCGGTAAGTTGTCGACCAAACATAGTTATGTCGCTCAACACTTGATTGATGTCGAGATGTTCATCAACGAACAGGGCACTGTGATTACATAGCTTCATATCCCCTTATCGTGTAGCACAATACGAAAGATGTTCTGCTTTTGAAGCCAAATATGAAAAGTTGTATCAGCTTATTATACGAAGGGGCAAGAGGTTCTGATCATGGCGTCGATGATGTCGTGGTCGGATCAGGGAGGCGGAAGGAGGAAGAGAGAGCTCGGAGGTGTATTGTTTCTTGAATTTTTTACATGCATAGATGGATAGGTTGTTATGAAGCTCACCTTTGAAACCTCAATT



gi|166116295|gb|FD549065.1|FD549065 RR3EQ93TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||.|||||||||..|||||||
TTTCACAAGCTGTTTTACGGA

EST sequence (targeted fragment marked with yellow):
GAACCTGCCCGTGAGCTCCCCTGCTGAGCTGGATCTCTCTCGATTTCACACAAGCGGTTAAAACCCCAGCGAAGCTGAACTCGCTGCACTTGATCCCAGATCTCCTCAGCTCTCTATAAAACCACAGAGCCTCGTTCAGATCCCCGCTCTTAGCGTAACCAATCACCATCGTGTTCCACGAGACGACATCCCTCTCAGGCATACCGTCGAACACGGCTCTTGCACGAGTCAACATCCCCGATTTGACGTACCCGGAGATCATACTGTTCCACGAGTACAAGTTTCTGAAAGGCATTTTGTCGAACACTTTGCGTGCGTCGACGTGTTTACCGCATTTCATGTACATTCCGATCAAGTGATTGGAGAGAAGCGTGCTGGGCGTCTTCTTGAATCCGGTGATCTTGAGGTGGCGATGGATCCATCTGCCTTGTTTTAAGGAGCCTGTGTCTCCGCAGCGCTGGAGAAGGGACGCGAGGACTTGGAAGGGTAAGCGAATCCCTTGTTTGGTCAGGGACTCGAGGCGGGAGACCGATTGGGAGAGCTCTTCTTTGAGAAACGATCGAGGGAGGG



gi|154095063|gb|EV528036.1|EV528036 RR1B495TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
|..|||||||||.|||||||
GTTTACAAGCTGCTTTACGGA

EST sequence (targeted fragment marked with yellow):
GGGTCTCTGATCTTGTTGCTTCTCTAACGTAGTAGAACAGTGTTGATGTTGGATTGAAGATGAGGTTTTTGTTTACTTGAATCTCAAATAAATCTTAGGCATTTCGTCGAACATTTGGAAGACGCCTTGTTCTATATAAACCTCTCTCTCTCTGTCTCTCTCGCGTTGTTACCACAATCGAAGCCTTGAAATGGAAAAGCTTATTGAGAATCATCAGTTTGCGACTCATGCTATAGCAGCCTCGGCATCTGTCTCGCTAGGAACTGCTCTAGCTTACCCTCTAGATACCATCAAAACCATCATCCAGGCTGGCTCAGGACCCAGTAAGAAACTGAGCCCATCTCAAGTCGTCAAGAGTTTTCCGCTTCTCTGGCTATTCAGGTTTGTATAGTGGTCTTGGATGGTTAACTCTAGGAAGAATATCAGGTGTTGGTGCAAGGTTCGGTGTCTATGAGATTCTCACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGCAAGTCAGTGAAGCTGTTCTAGCTGGTATGGTGGGAGGTGCAGCAGAAACAGTGATGACTTCCCCCTTTGAGCTAATCAAAGTCCGACAACAAGTAACCGCTGCTTCACGGGCTCCAAACGCTGCAGCCGCTGCGGAGACCGCACCTGTAGTTTCA



gi|161516395|gb|EY896338.1|EY896338 RR1EB23JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence

AAGGTGTTCGACGGAATGCCT
|.||||||||||||||| |
GTTCACAAGCTGCCTTACAAA

EST sequence (targeted fragment marked with yellow):
GGGACAACGGAATAAATCAGTATGATACTGATAAGACTCCTAGATACGTGAACAACACACATTGTCTTCAAGGATTGGAAGATTAAACCTGGATTGGATTGATCCTGATCAGTCACAGGAGAAGGAGAACGAGGCTTTCCAGCTTGCAATGGCTCTTGCTGGAGAAGAGTTCCTCCAAAGTGTTAGATTTCATGTAAGGTCGTGGTTACCGGCTCGATCAATAGTGATGCAGTGTCTTGAAGAAAGATTCAAGACAGACCCAAGTGGGGAGATCATGGTATTGAAAAAATTCTGCCCTTGGAAGCTTCACTTGTTTGAGCTTGAACAAGAGATGAAGATCGAACCCCTCATCAAATACGTCATTTACGAGGACGAGCGAGGAAAGCAATGGAGAGTGCAAGCAGTGGCGGTAGCACCGGACAGGTTTGAGAACCGAAAGGGTCTTCCTGAGCAATGGAGAGGACTGAGAGATGAGCAACTCTCTGAAGCTGCTGAGATCCCAGGTTGCGTATTCGTTCACATGAGCGGCTTTATAGGCGGAAACCACTCCTTTGACGGCGCTTTATCCATGGCTCGAACTGCTCTCACTCTCTAAATTCAAACCAAAAAAGCATAAAGAGTCTAAAAGTACTTCTTTATACTGTACAATTTCTATTTTTTTCAGTTGAAGTCGTTAGCAAACATTCCGTCGAACACTTGTAGGGCAATTCACGATCGTTGCCAAATATTTTATGTTCTTTTCCTTTTTTGCCAAAAAAAAAAAAAA



gi|158646582|gb|EX756473.1|EX756473 RR2CC92TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

AAGGTGTTCGACGGAATGCCT
||||||||||||.|||| ||
GTCCACAAGCTGCTTTACAGA

EST sequence (targeted fragment marked with yellow):
GGAAGGCGAGCTCGAGGAGGCTCTGTTCCACGCCGGCGCCGTACCGGAAGCCGATCGGAACAAGCCGAGACAGTACGAGTGGGCTCGGTCGGCTCGAACCGATAAGGGAGTGAGCCCGGTGGGGCAGGTCGTCTCGGGACGATTCTACGTCGACCCGCCTGGGTTCGTGGAGCGGCTGAACTCGAATCTCCCCGATCAGATTCGCGTGTTCGGGTTCAAGCGCGTGGCGCCGTCGTTTAGCGCGAAGAAGTTCTGCGATCGGAGGAGGTATGTGTATCTGATCCCTGTCTTCGCGCTTGATCCGTGCTCGCATAGCGAGGCTGAGATGGCTAGGTCGGATTCGGGATACGAGTATGTGAAGTGTGTTGAGTGTTGCGAAAGGGTATAAGATCCCACTTGGTGTTTTGGGCAAAGAAAGTGTCGATGATGATAAGGTTCAGTCAGACATTTCGTCGAACACCTGTGGTGCATTAAAGGTTGAGACTTTAAACCCAGAATCTAAGAGTGAAAGCAAGTCTTTTTGTTATGGAGAGGAGGAGAAGGAGAGGTTGAACAGAATCCTAAGCTATTACGTTGGTTCACATAACTTCCACAACCTTACCACCAGAACCAAAGCAGCAGACCCGGCTGCGAACCGTTACATTCTCTCCTTCATGCCCACACTGTGATTACACT