| mature miRNA: AAGGTGTTCGACGGAATGCCT species: Raphanus raphanistrum subsp. maritimus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|154094525|gb|EV527498.1|EV527498 RR1AY90TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence AAGGTGTTCGACGGAATGCCT EST sequence (targeted fragment marked with yellow): GTTTACTTGAATCTCAAATAAATCTTAGGCATTTCGTCGAACATTTGGAAGACGCCTTGTTCTATATAAACCTCTCTCTCTCTGTCTCTCTCCGTTGTTACCACAATCGAAGCCTTGAAATGGAAAAGCTTATTGAGAATCATCAGTTTGCGACTCATGCTATAGCAGCCTCGGCATCTGTCTCGCTAGGAACTGCTCTAGCTTACCCTCTAGATACCATCAAAACCATCATCCAGGTTGGCTCAGGACCCAGTAAGAAACTGAGCCCATCTCAAGTCGTCAACAGAGTTTTCCGCTTCTCTGGCTATTCAGGTTTGTATAGTGGTCTTGGACGGTTAACTCTAGGAAGAATATCAGGTGTTGGTGCAAGGTTCGGTGTCTATGAGATTCTCACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGCAAGTCAGTGAAGCTGTTCTAGCTGGTATGGTGGGAGGTGCAGCAGAAACAGTGATGACTTCCCCCTTTGAGCTAATCAAAGTCCGACAACAAGTAACCGCTGCTTCACGGGCTCCAAACGCTGCAGCCGCTGCGGAGACCGCACCTGTAGTTTCACCAATGATCACAAAACTTCTAAGAAGATACACTCTCGATGTGAAGTCATTGACACAAACAGTCAGTCTCTTGTCCGTCTTGAACCATAAACACCCAAACATGGCAGCCGCTTTGCGAGAGTACCCTTGGATGATGACTGGA | |||||||||
gi|167480555|gb|FD963757.1|FD963757 RR1GI76TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence AAGGTGTTCGACGGAATGCCT EST sequence (targeted fragment marked with yellow): GGAGAAGAACTAATACGTACATACACATTTGTACATACTAACCACACACACAGATGTATATATAACCTATGATATATTTAGGCAGAATAAATCCTCTGTTTTATACAACAATGACAAAAACACTTGAGATTGATATCAGATCTGCAGAGGGGCTCAAGATAAACCGGAGACTTATCAAGAAGAAAAAGACTTTCGCGGTCGCAAAGATCGGCGATAAGTTTCGAAAAACGTATCTGGACGACTCCGGAGGAAGCAATCCAACGTGGAACTTCAAGTCGGAGATGCCAATGAAAGGGAGTGTAAAGTTCATCTCCATTGAGGTATTTTATCGAACACGTTGTGGGCGTGATAAGAAGATCGGAGAAGCTCCAATCCCGGCGACGGATTTCATGGAAACGACAATGTTCATGGCTCCTTCTTCTTCTTCGTCTGAACCGCCGTCGATTGATGGGTATGGTGGTCGGATTGTAACTGGAGTTCCGGTTTGGCGTTTGACATCATAAACTGGTGTTTGGTCCCCACCGCTTGCGCTGTAATACTTCATGCCCGAGGAAGAAGACGTGTTACTACAGGAGTAACTTTTTTTGGTGTGTGTTTCAACGGCCGACATACACTGGTGTTTGGCTTGCACGTCTGTCCTAAGATTTTTCCCAATTCGGAATTGAGAAGAAAGATGTGATTAGTGTTTTTTCTATACAAGAAAAATGAGTTTGTTGTATGAATTGATACGAATTTC | |||||||||
gi|167474103|gb|FD959325.1|FD959325 RR1G854JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence AAGGTGTTCGACGGAATGCCT EST sequence (targeted fragment marked with yellow): GGGACACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACGACTGTTCTCAAGAAGGAGAGTGATAGTTTGACTGATCGTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAAGTGACGGGGGATTGAATTTTGTCTGAAGTCAACGAGATTTACGATCATGCGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTCTTTGTCAGGAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGATTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATGTTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTTAACTGCGTTTTTACACTAAAAAAAAAAAAAAAAA | |||||||||
gi|158637302|gb|EX747193.1|EX747193 RR1BX53TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence AAGGTGTTCGACGGAATGCCT EST sequence (targeted fragment marked with yellow): GGGACACACACAATGGCTTCGTCTGCGCCTATTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACTGCCGTAGCATCGGGATTTTATGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCGATGACTGGGATCTTGCTTCTGAGCTTCCGATCTGTAAGTCAGAAGTATCGAATTCACGATCTGGAGGAAGACACGACTGTTCTCAAGAAGGAGAGCGATAGTTTGACTGATCGTATGAATAGAATCAAGAGCGATCTTCTGCATCAAGCGTCCATTGACTCTTCCGGCGTCTTTGCTGCTCGACTCCGTCTACTTTTCGGTGACGATAAAAAGTGACGGGGGATTGAATTTTGTCTGAAGTCAACGAGATTTACGATCATGCGATGTTGTATTAATTCTATACAGATGTCTCTGTCTGTAAACGATGCGTCTTTGTCAGGAATTTAGCGAATGAATAAGTAAGGTTGCAAGGTGTTGTGATTTAGACAATGGAGTATCGTTTTAGTTTTGTCTGAAATCGTGCTTCGATGTTTTATGTTTTTGAACGGTTAGGCTTTGCAGATTTGTATGAGGAATTTCATCGAACACTTTAACTGCGTTTTTAC | |||||||||
gi|154095063|gb|EV528036.1|EV528036 RR1B495TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence AAGGTGTTCGACGGAATGCCT EST sequence (targeted fragment marked with yellow): GGGTCTCTGATCTTGTTGCTTCTCTAACGTAGTAGAACAGTGTTGATGTTGGATTGAAGATGAGGTTTTTGTTTACTTGAATCTCAAATAAATCTTAGGCATTTCGTCGAACATTTGGAAGACGCCTTGTTCTATATAAACCTCTCTCTCTCTGTCTCTCTCGCGTTGTTACCACAATCGAAGCCTTGAAATGGAAAAGCTTATTGAGAATCATCAGTTTGCGACTCATGCTATAGCAGCCTCGGCATCTGTCTCGCTAGGAACTGCTCTAGCTTACCCTCTAGATACCATCAAAACCATCATCCAGGCTGGCTCAGGACCCAGTAAGAAACTGAGCCCATCTCAAGTCGTCAAGAGTTTTCCGCTTCTCTGGCTATTCAGGTTTGTATAGTGGTCTTGGATGGTTAACTCTAGGAAGAATATCAGGTGTTGGTGCAAGGTTCGGTGTCTATGAGATTCTCACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGCAAGTCAGTGAAGCTGTTCTAGCTGGTATGGTGGGAGGTGCAGCAGAAACAGTGATGACTTCCCCCTTTGAGCTAATCAAAGTCCGACAACAAGTAACCGCTGCTTCACGGGCTCCAAACGCTGCAGCCGCTGCGGAGACCGCACCTGTAGTTTCA | |||||||||
gi|161516395|gb|EY896338.1|EY896338 RR1EB23JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence AAGGTGTTCGACGGAATGCCT EST sequence (targeted fragment marked with yellow): GGGACAACGGAATAAATCAGTATGATACTGATAAGACTCCTAGATACGTGAACAACACACATTGTCTTCAAGGATTGGAAGATTAAACCTGGATTGGATTGATCCTGATCAGTCACAGGAGAAGGAGAACGAGGCTTTCCAGCTTGCAATGGCTCTTGCTGGAGAAGAGTTCCTCCAAAGTGTTAGATTTCATGTAAGGTCGTGGTTACCGGCTCGATCAATAGTGATGCAGTGTCTTGAAGAAAGATTCAAGACAGACCCAAGTGGGGAGATCATGGTATTGAAAAAATTCTGCCCTTGGAAGCTTCACTTGTTTGAGCTTGAACAAGAGATGAAGATCGAACCCCTCATCAAATACGTCATTTACGAGGACGAGCGAGGAAAGCAATGGAGAGTGCAAGCAGTGGCGGTAGCACCGGACAGGTTTGAGAACCGAAAGGGTCTTCCTGAGCAATGGAGAGGACTGAGAGATGAGCAACTCTCTGAAGCTGCTGAGATCCCAGGTTGCGTATTCGTTCACATGAGCGGCTTTATAGGCGGAAACCACTCCTTTGACGGCGCTTTATCCATGGCTCGAACTGCTCTCACTCTCTAAATTCAAACCAAAAAAGCATAAAGAGTCTAAAAGTACTTCTTTATACTGTACAATTTCTATTTTTTTCAGTTGAAGTCGTTAGCAAACATTCCGTCGAACACTTGTAGGGCAATTCACGATCGTTGCCAAATATTTTATGTTCTTTTCCTTTTTTGCCAAAAAAAAAAAAAA | |||||||||