miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AAGTCATCAACAACAAAGTTG
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|9855089|gb|BE600016.1|BE600016 PI1_78_D08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence 

AAGTCATCAACAACAAAGTTG
||||||| |||||| | ||.|
TTCAGTAATTGTTGGTGCAGC

EST sequence (targeted fragment marked with yellow):
GCACGAGGCCCGACCGCGCTCTACCGCTGCGCGTCGCTCCAGTACCTCGACCTGTCCCAGAACAACCTCACCGGTGAGCTGCCTGCGGACATCGGCAGCCTGGGGAAGAATCTGACCACGCTGTGCCTATACAGCAACGGGTTCAATGGCTCCATCCCGGCGGGTCTCGGGGCGCTGACGAGGCTTCAGACCTTGTGGATCGCCAGCAACCCATTCGTCGCGGGCGAGCTGCCGCCGTCGTTCAAGAACCTCACCAACCTAGTCAGCCTCTGGGCACAGCAGTGCAACCTCATCGGCGACTTCCCGAGCTCTGTGCTTGAGATGAAGGAGTTGGAGTTGCTGAGCCTGGCCAATAACATGTTGACCGGAAGCATACCTGCGGGTGTTTGGAGCCTGAAGAACTTGCAGCAATTGTTTTTGTACGGCAACAACCTCACCGGCGACGTGGTTGTTAATGACTTGGCCGCGACGAACTTAAATTACATCGACCTTTCGGAGAATTATAAGCTTACCGGAGCCATCCCTGAAGCCTTTGGGGCCTTGAAG


gi|57803992|gb|CX606458.1|CX606458 ANR1_3_D08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_3_D08_A002 3', mRNA sequen 

AAGTCATCAACAACAAAGTTG
| |||||||||||||| ||.
TACAGTAGTTGTTGTTCCAGA

EST sequence (targeted fragment marked with yellow):
AAACTTAGCTGATAATAAATAAAGGAAATGACGATTTAGCAATTTTACAAGTAAACTAGAATCTAATGATCTAAGGCTGTTTACTGATGGTTACAAGAATGACAACTCGAGCACAAAAATTGATGCAACGTCCCAGTAAATCGACAATTGGATCCCTTACATCACTTGATTTGTTGTACAGAGCATACACTTGAACCTAGCAAGAAATGTGTTGGGAGCTGACAAACAATAGACTCATCTGATAAAAATTGCTAGACAAGGTTGCTATATTCTGTCATTGAAACATCCTGAGGAAGTTATTTGCATACGCCATCGGCCTCACATCAGGGTGTGGCACAGCTGAAAAAGTAACAATATCTGGTTTCATTTCTGGAGCTGTGAAGCGAATAAATGCACCCTTGTTGCCCATCTGGTCACAGTAATTAGGCGCAGAGAAGACTGTTATAAGCTTCCCATCATGTTCAATTTCATGGCCTTCATCCTTTACTTCATGGGACCGGACAATAAGATCCAGGTTATTTTCCTGTAGAAACTTCTTAGTCACATCTGCGCCAAAGGAAAGAGCAACACCACGTTTGCTTGGTCCTCTTCCAAGCTGAGGCTGAGGGTCACTCCATAGTAGTTCACACATTAGACCTTCTTCAGGTGGTTCACAGAAACGATCAATGGACCTGATGTCTGAAAGTTTCACCCCATCAACACTAAATAGCCCTCCATGAACCACAAAGACCTTGTTGTTGATGACATGCGCAAGAGGTAACCAACAAAAGACTTCAGCAAAAAG


gi|14366073|gb|BG947884.1|BG947884 IP1_6_E05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence 

AAGTCATCAACAACAAAGTTG
 ||.|||||||||||||| ||
GTCGGTAGTTGTTGTTTCTAC

EST sequence (targeted fragment marked with yellow):
GCACGAGGCCGGGTTGGAGGACGAGCTCTGGGCCCATTTCCAAGGCCTACCTGCCAGATATGCTTTGGATGTCAACGTAGAGCGGGTTGAAGATGTCTTACTGCACAAGAAATTGCTCGAGCAAGCCCATGAACCCATGAATGGTCTGGTCTTTGATGTTCGTCCTTCACAGGTTGTTACTCTGGAAGAAAGCACTGGATTTGAGTCCGCAACTTCCTTTAAGCAAGAAGAACAAGATCCCCAGTGCTCAGTATTCACATCAAGAGGTCAAAGGCCTCTGCATGAAATTATATTTGCGTGTGACGATAAGCCAAAGCTTCTGAGTCAGTTAACCTCTCTTCTTGGGGAGCTTGGTCTTAATATCCAAGAAGCACATGCATATTCGACGAGTGACGGCTATTCCTTGGACATCTTTGTTGTTGATGGCTGGAAGTATGAGGCTGATATTCTCCGAAGTGCATTGAGGG


gi|30977132|gb|CD233667.1|CD233667 SS1_3_C09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_3_C09_A012 5', mRNA 

AAGTCATCAACAACAAAGTTG
||| ||||||||| ||||| .
TTCCGTAGTTGTTTTTTCATT

EST sequence (targeted fragment marked with yellow):
TGTTGGCCTCTGGTCTCTCGCGGCCTGCGTATCCCTCTTCCCTCGGCTGCTTCCTCCTCCCTCCGCATCCACACCATGGAATCCTAGCGCTAGCTCGGCTAAATCGAGGGGCAACCAGTGGTGCAAACAAATCGGGTGATGCTGCAGGCGTACAGCCGCTCCTGCGCGCATGGCAGCACGTGGCGCGCGCCGTGCTCGTGCAGCCGGACAGCCGCCGACCGGCATTGGCGGCTTTGCGTGCTGCTGGTGAGTGGTGACTGGTGAGTGCTACTAATCTCATATGGGCTAGGCGGCTGGCCGTCTCACGGAAACTCGAAAGCACATCAGGGTCTGCGATTGGCGCACGGCAGCTGCTTGTATCGATTTACTTTTTTGTTGATGCCTTCTGAAGTCTCAATCTCCCAATCTGGCAAGTGGCAAATCCCCATGAGTCCATGGAATATCATACTTCTTCATCTCTATTTCAATTGCATAAATTGAAATCGACGATTATATATTTGTACCGAATTTTTATAGACTTGCACAAACTGAATTGGTTAAATGGGATCATCATTTAATCATTCCTAAATACTACTTTAGTTGTCTTTTGTGAAAAATACATCTCTGATTTCTTGTAAGTGTCCAACTTTTGTGTGTTAATTCAAGTTCAGTGACTATTCTGAT