| mature miRNA: AAGTGCAGCCATGAGTTTCCGTGC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88731683|gb|CI755296.1|CI755296 CI755296 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): ATGGTTTTCAGCGCCCAACTTTGACCATTCTTCTTATTTGAAAATTTTTTGAAAAAAATTAAAAACATAAGTCACGAGTAAAGTACTATTCATGTTTTATCATCTTATAACAACAAAATTACTAAGTATAAAAAAATTTCAAATAAGACGGACGATCAAAGTTCGGCGCGGAAACTCATGGTTGCACTTATTTTGGGACGGAGGTAGTAAGTCATAAGTACATGATTTGAGTATTAATTTACTGTAAACTTAAAAATGAGTCTATTTGATTTCCTTACAAAGATTTTTGCATAGAAAATTTTTGTATGAAACGTACTCCCCTCCGTTTTTTAATAGATGACGCCGCTGATTTTTTTCCTCACATG | |||||||||
gi|88694704|gb|CI738742.1|CI738742 CI738742 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): ATTAGTTTTTTTATTGTTATTAGATGGTAAAATATGAATAGTAATTTATGTGAGACTTAACCTTTTACAATTTTTCCATAATTTTNTCAAATAAGACGGACGGTCAAACGTGGGGCACGGAAATTTATGGCTGTACTTATAATAGGACGAAGGGAGTATTGTCCCATCAAATAGTTCAATATACGTTATACTTCTTATGGTATCTCTTACTCTCTTATCACGACACTCTTTGATCGATATATTATGCCCCACATGCCTCCCATGCTTTCTTCTTCGGCCCAAAAGAATCACTTTTGCATGCAGTATATCTTACTGTGATGACTGGGTGGAGGGGCTGACTGGAGCCG | |||||||||
gi|88244688|gb|CI243810.1|CI243810 CI243810 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): TTAGCTAGCAACTCAATGTTTCTCATTGTAATCAGTAATCGGTCAAATCCAGTACCAATCCAGTTAGGCAGGGGCGGGCATGCGAGTAAACAAATACTTCCTCCGTTCCAAAATAAATGCAGCCATAAGTTTCCGCGCCCAACTTTGATCGTCTGTCTTATTTGAAATTTTTTATAATTAGCATTTTTCTTGATATAAGATGATAAAACATGAATAGTACTTTACTCGTGACTTATGTTTTTATTTTTTTAAAAAAAAAATTAAATAAGACGAATGGTCAAAATTAGACACGGAAAACTATGGCTGCACTTATTTTGGGACGGAGCGAACAGTAGGAGTAGTACAGCTAGCGAAGCTAACCCCGGAAACGATGCCAGTTAGGAGTAATAATTTGGTGTGCCAAACTTGACATGGATGGAAATGTAGACAAGACTTTCTGGGAATCGTTAGCGCACGAGGAGGAAGGACACAACTAGCAAGGCAGCGAATTGAACACAGAATTGTAGGCATGCGTTCGTGCA | |||||||||
gi|58660729|gb|CK049409.1|CK049409 50053rsiceh_21053.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGATCGGCACGAGGGATGATTTATCCANATTGGCAGATATGTACTCCCTCCGTCCCATTTTAAGCATAGCCATAAGTTTCCATGTCAACTTTGATCGTCTATTTTATTTAAATTTTTTTTATGATTAGTATTTTTATTGCTATAAGATAATAAAACATGAATAATACTTTATGAGTGACTTATGTTTTTAATTTTTTTCCAAAATCTTTTTAAATAAAACGGACGATTAAAGTTGGACACGGAGATTCATGTCTGCACTTAAAATAGGACGGAGGGTTTATATGTAGCTAATGGAATATATTTATTGAGGGATATAATGATATGATGGACATTTTTTAGGCCAAAGATCGATCACGGCCAATCTGGTCCTTAATTTATCAAGAAAGCTAGCAATATTGTGACAAGAACCTCATGTACCATGAATGTTTATATGCTTCTGATCGATCACATGTAGAAGGGTAACTTTTCAATAAGATGCATGTAGATTTTCCAGATAAGTTTGTTCTTTATTTATATACTTAACAATATAATATCCAACGTGTTACTGCAGGATTTGTATGAAGCAAATAAATAATTTGAGTAAATGGCTACAATATATGGCAGGT | |||||||||
gi|29683669|gb|CB679944.1|CB679944 OSJNEf04B14.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf04B14 5', mRNA sequence AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): CTCATAACAACAAAACCTTTAATTATAAAAAAATTTTAAATAAGACGAACGATCAAAATTGGGCGCGGATACTTATGGTTGTACTTATAATGGGACGGAGAGAGTATTCAAGTATGCAGAAAACATCGCAGGATTACAATGTTGTTTCCGTATGAGTCCTATCTGTTGATCAACAAGACAGAATGCTATAATCTGCAACCTCCTGTAAATCAAGCCGTACGTTCTCTGTGTAATCGGTTGACTGGTTGGCATTAACAAGCTGCTGCTTGCCAGAAAAGAAAAACATGACTTTTCTG | |||||||||
gi|29628277|gb|CB633288.1|CB633288 OSIIEb12A20.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb12A20 5', mRNA sequence AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): GGCCGGTCTGGTCCTTGTGCACGTGACATCTACTACATCCGTCTCAAAATAAGTGCGGCCATAAGTTTCCACGCTCAACTTTGATCGTCCGTTCTACTTGATTTTTTTTATAATTAGTATTTTTATTGTTATGAAATGATAAAACGTGAATAGTACTTTGCTCGTGACTTATGTTTTTAATTTTTTTAAAAAAAATTAAATAAGATGAACAATCAAAGTTGGACATGGAAAATCATGGCTGCACTTATTTTGGGACAGAGGGAGTATTTGTTAATATATGAAATGATTAATTTTAATTTTGAATCCCACTATAGGGCTATGTAGTGTTAGTAGAAAATAATATAAATAATCGAAGTGATCATATATCTATTTATACTACAACCTCATTACATGGTAGTAGAAACGTGGAGCAATATTATTATAAGAAAAATGTGTGGAGAGACAATCATTATTTAGTAGTGACTTTTTTTTTTGCTTTTCGATGGAATATGAGCGATGTCATTGCCAGCGCAATGAATGACCTCGGATTGATCTAGCCATGATAAACATAAAAGATAAATTTGTCCCTCGTCATTGTATAAATAAATTGGATTGATCTAGCCATGAAAAACATAAAAGATAAATTTGTCCCTCGTCATTGTATAAATAAATTACTAACTTATTCTTAATAATGAACGGTTAATATTATTTTTATTGTAGTATAATACTACTTAGTANAGAGAGCATTGGAATCGTTCATTAGTTTTATTAGTGGTCTTTTTTAAAAAAAAATAAAACATAGATAGAAACTCACATGACCGCGACAACTAGAAGCTAGGTACTATGGGTATCGAGCGATCTCTCTCATCTC | |||||||||
gi|88203267|gb|CI203116.1|CI203116 CI203116 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft AAGTGCAGCCATGAGTTTCCGTGC EST sequence (targeted fragment marked with yellow): TCAGTGAAAAGATTTTCCTTTTCCTTCATCGAAACTGATACTAGACTATATCAAAATAATCTACTTACTCCCTCCGTCCTAAAATAAGTGCAGCCATGGTTTTCCACGTCTAACTTTAACAACTCGTCTTATTTGAAAAATTTTTGAAAAAAATTTAAAACATAATTCACGAGTAAAGTAGTATTCATGTTTTATCATCTTATAACTACAAAATTGCTAATTATAAAAAAATTTCGAATAAGACGGATGATCAAAGTTGGGCGCTGAAACTCATGGCTGCACTTATTTTGGGACGGAGGTAATACAAGTTACAAGCCATGATCCGTTCATCTGAATTCTGACATGTATGTACATTCATCTGAAAAAACATGCGGAGTACGTAATGACAGTTTACCACTGGGCGAACAAAGCTACAGCTATGGCAAAAACAAACCATGTAAGTAAGATTAAATACCACATGCCACGACTCGTCATGCCGAGGCCGCCGCCGGCGCTGCGGGCGGGAGCCTCGGAGAGCCGGCGCTGCGCGGTGGCGCGAACCTGGCGGTGACC | |||||||||