| mature miRNA: AAGTTATGAACATAAAAGTTG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9304992|gb|BE363435.1|BE363435 WS1_62_H11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence AAGTTATGAACATAAAAGTTG EST sequence (targeted fragment marked with yellow): GTCAGTTCAAATGATATGCATGTTGGCTATGTTGTGTAAGCTTTTATTTATGGTCGTCTCGCTCAGACGGTATTTGGCTTCGCATTTAGCTAGCTATGTGATGTACTATTGTCCCTGGTGTGTTACACTGCAGCCAGTAATAGTAATCTGCAACTGTCCGTTAAGTGGTACTGATGACCATTTGCATTCTCAGTTATTTTACTCTATATATAGGTGGTAGTCTCATGGCACTATATCTTTTTTGTTCATAAGTTTTTTTGGTTGAATAGCAAATTTGAATGACTTT | |||||||||
gi|37757255|gb|CF771650.1|CF771650 DSBF1_22_D02.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_22_D0 AAGTTATGAACATAAAAGTTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAAACACTTAAAACCCATATCTGGCTCTTATGTTCATAACTCTTGACCAGATAAAGCAAATCCTTACATTACATAAACAAGCCAGAACATCCTCAGGACTACTGCTTCAACCAACTCGATGGTCTGGCTTCGTTGAAATGTCTTATTTGAAAACATTGCCTCACTTGGGGGCTTGGCACTTCTTTTCCAGATCTGTAGGGCTTAAATCAAGGAGCTCCATAAAATGCAGGGCCTACACCAACGTCCTATGATGCCCAATCTTAGTAATATGAACCGGAACCGCTACCTCCATAGTAGCCACCATTGCTGCTACCCAAATTGCGGCT | |||||||||
gi|31344875|gb|CD429232.1|CD429232 ETH1_3_B09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_3_B09_A002 3', AAGTTATGAACATAAAAGTTG EST sequence (targeted fragment marked with yellow): CTTCGGTAAGGATCTTGATATTCTTTCACATTTCAATTTTTTTATTAATATATATCATTTATGTTCATATCTTTAATTCAACACATAATAGCTTCTCTATCTGCTATCATACTATTTATATATAATCTCAATCCTTATACGTTATTTTTCTCTTGATATATACCATCACATTCTCACATTATCCTCACGTTACCAATTATAAAGTCTCGGTCTCATTAATCACCTCCAGAGGTCTCTTGTTTATCCCATGGGGTCCAGGACTCAACCTATCACCTCCCTCTATATCATCATGCGGATTACTGATCTTTATCACAGCCTTCTGACTTCCTCTTCTAAAGGAAGTGAAAGACATGAGATTATTAATTTTGTTTTTTTTTTAATGTTTTTTATTT | |||||||||
gi|37759585|gb|CF772810.1|CF772810 DSBF1_39_F09.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_39_F0 AAGTTATGAACATAAAAGTTG EST sequence (targeted fragment marked with yellow): ACCTCAAAGCGCACTCCATTTCTGTCTCAATAACGTTATAGAAACACTGGAAGTAAACATGTCGAAACACTTAAAACACCATATCTGGCTCTTATGTTCATAACTCTTGACCAGATAAAGCAAATCCTTACATTACATAAACAAGCCAGAACATCCTCAGGACTACTGCTTCAACCAACTCGATGGTCTGGCTTCGTTGAAATGTCTTATTTGAAAACATTGCCTCACTTGGGTGCTTGGCACTTCTTTTCCAGATCTGTAGGGCTTAAATCAAGGAGCTCCATAAAATGCAGGGCCTACACCAACGTCCTATGATGCCAAATCTTAGTAATATGAACCGGAACCGCTACCTCCATAGTAGCCACCATTGCTGCTACCCAAATTGCGGCTCGAGGAGTAAAGCGAAGAATATGAACTCCCACCAACATCAGATCCACGAGACCCATAGCTACCACTGTAACTCGGTGG | |||||||||
gi|160713604|gb|EH409267.1|EH409267 RTHAIR1_35_E10.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_3 AAGTTATGAACATAAAAGTTG EST sequence (targeted fragment marked with yellow): TGGTTGATAGTTTTGAGAAAACGAATTTAGAGAACACACCAGAGACTGAGAAGGAGCAAAAGATCAGCACAAGCTATCAAGGCATATACAAGCAGTTAGTTGAAACACTAAGATATTTGGGTGTAGGAGTAGTGGAAACAGTTGGCAAGCCATTTGATCCTTCAGTCCATGAAGCCATCTCACGAGAAGCATCCATGCAATTCAAGGCAGGGATTGTCATGCATGAAGTCCGCAGAGGGTTCCATTTGAAGGAGAGGCTGCTAAGGCCTGCTACTGTTAAGGTCTCTACTGGCTCTGGCAAACAAAGCGCAAGCTCATAAGAGGGGGGCAAAGATGCCTTTTTGTGAATCTGATCAAACGACCATCAGGAACTGATAGACAAGGAACCTCTCCTTTTGAGCAACTTTTCTGTTCATAACATGACAAATGTGTTTGATATCAAATGAGATAGGTCACCTATGTATGGTGTTGCCAGGGAGCATCAGCTTGAAGTTTTGCTGTTATTTGTAATCTGCTAGAATTTTGTCCACCAAAAGAGAGTGAAACATTCAACATACATACCGGATATATTGACTTCCTTTCTCCAACTA | |||||||||
gi|34512581|gb|CF483712.1|CF483712 POL1_24_E07.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_24_E07_A002 3', mRNA sequence AAGTTATGAACATAAAAGTTG EST sequence (targeted fragment marked with yellow): GAAAAAAAAAGCCAATTTGGTTTTATTTAAGAGCAGTAGGAATCGGACAAAAGAAACAAGAGAAATGGTAGAGACAAACTAATTAGAGCAATTTGCCTAGGCAACACCGGCATTGCAGCCAGGCGCTCGATATCAATCGCCTGGACATCCACGCACCTTCCCGGTACAGGCAGCTACTCAGGAGACCAACCAAATTTGTCGCAGGGCTTGAACCAAACAAGCCCTTGAACCTGGCATAGATCAACTTCAACATTCAAGATTTACTGAAACTAGGCACAGATCATTTTAAAATCAAGTGTACCCAATCTTTCTGGTACAATTATATGTGTGGTCCAAATTGATGTGCATTTGAGTCTGTTCAATTGCACAACTCAAACAGTGGCTTCAACTTCAATGTCAATGACTTGGAGCAGGCATTAAGTGGGAGCAGCAAACAGGATGAAAAGGCATTATACCTCGTGCATCGAAGTAACGGTTTTGTTCATAACTTTTCTTTTAGACAATAGAACAGGTTCCAGCCTCTACTCCACCAAAAGGGAAAACACAGCTGTTCAATACATCATGAGCACATAGACTCCATCTCCAACAGATATAGTTCAGAAACAATTAGCAATAATAACGAAGTAAAGACTGAA | |||||||||