mature miRNA: AATACTTCCTCCGTCCCAAAA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|166071023|gb|FD521282.1|FD521282 RUS25F03w HA Hordeum vulgare subsp. vulgare cDNA clone HA29H20, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): CGCTTACGACAATAATTACGGGACGGAGGGAGTATTAATTAACATAGGTTGGATGGTACTCGATCATCCGACAGATCGAACTATCACTCGATCAATGGAAGTTTACGATGGATCGGTAGGTTCTTCCGGGCTGCCAGCCGGAGGGGATGACATTGGTGGCGACGAGCTTCTTGCCGGAGCTGGAGGTGAGGCGGATCGACATGGGTGTCTGCAGGGTGGACCCGGAGTTGTACTTCCACACCGCGCCCCATGACTCCTGCATCGGCGCCCACCTGCCGCCGCGCTGCTGAAGCTCGACCGCCGACAGGTCGCCGTCGCCGGCCTCGTCCTCGATGAGCAGCGCAAGGTAGTTCGGGTTGGAGCCACCGTCCACCCTGAAGGCTATGTCTAGCCCATGCCAGTTGCACCGAACCCGGTTGTACTGGACTCTAAGTCTGCCTGCGTTGCGGAGGTTGTCGGCCTGTCCGGGCTTGGCCATGGCGCCGAAGGCCTTCCCGCCGAGGTCAAAGTGGGCAGCCTCGGCCAGGCACGGCCCGCCGGGGCACTGGTCTGTGACGACCACGGTCACCGGGAACCCGGAGCAAGCGCCATGGTTGGTGCATCTAACCTGATAGCAAGCGCCGCAGCCCTTGCCGTTCTT | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|217040545|gb|GH206887.1|GH206887 HV_CEa0008C11r2 Hordeum vulgare (Blumeria challenged) seedling green leaf cDNA library HV_CE AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGAATCTCTAAAAAAACTTATATTTAGGAACGGAGGGAGTATGTGATAAATGAGATATGTACATATACTATACATACTGCACTAGCGAGAATGTTAGGGACAATGTACATCTGCATACAACCTGAAATTTAACAACTTATTTATTAGTCTTGGACATCAGGAGGTACTATCAAGCCCCTCGACCTCTAGTGCTACTTCATTGCGCCTTGCGAACGGAGGTGTGAAAGGGGGATTATACTGTGCAATTTCCACGACTGAATCCTCTTTTACTCGATACTGGGTATCTTTCTGGAGAGCTTTCCGCAATCTGGATTCCCTTTGGCTTATGTCATCATCTGTAACCAAACCTGGAAAGGCCGCAACCGCTACAATTTTGCTGGGCAC | |||||||||
gi|217054729|gb|GH220849.1|GH220849 HVSMEi0015K13f2 Hordeum vulgare 20 DAP spike cDNA library HVSMEi (HVcDNA0010)2 Hordeum vulga AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): AAGGAAGGAACGAACCACAAGCTATCTCCGGTCGCCTGCTTCCTTCCCCAATCCACCCACCGCCTCCCTCGCCGCCGGGAACCCACGAGCGGAATCGGAATCGGAATCAGCAGCGACACGGCGGAGGGGTTGGGGCGGAGGAAGGATTTGCCCGGCGGCTCAGGGATCTCGTCGTTTGGCTCTCCCTCCTCCTTCTTGATTGATCGACCGGTAGGTGGGC | |||||||||
gi|217044044|gb|GH210689.1|GH210689 HVSMEa0012F17r2 Hordeum vulgare seedling shoot (cold stress) cDNA library HVSMEa (HVcDNA0001 AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAGGGACGACAATCGAATCGTATTTGTAGTACGTGTATAACAGGTGATGAAACAGTGTCCGGACACAGGAAAAATCTAGGCTGAAAACACAAACCTGGCTGCTTCACCTGCCTTCTACAATACTCCCTTAGTACAAAGTCAAGTCAATTATTTTGGGACGGAGGGAGTATAACATAGGGCCACGGTTACACGCAGCTGGTAACTGCGCCCGGATGCCACATTAACATAATTACATCTTGCATGTAACAAGTATACACATCTGATAGTAGTAGCTCTTGCAAGTCTTCTATCATCTTCTTGCCGATTACACTGCAGCCCTGCATCAATCAGCACTGAAGAATCACTTCGCTTTCCTCCTGTTTCTGCTCTATGGGATAATCCTACATCTGTGCAGATAGGATTTCCCGATCCAACAGTTACCAGCGTACGACTAACCGTGTCCAACAAGGCCGGGTTTCTCTTAGCCTTATATACGGCAGCGCGATAGAGGTAACTTCAGCGAAACCTTCCAGGCCTTCTGCGATGGAGGCTGGATATAATTGGCAG | |||||||||
gi|57830388|gb|CX631601.1|CX631601 GAN003K12f GAN Hordeum vulgare cDNA clone GAN003K12 3-PRIME, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): AATCTTAAAATGGCTTATATTTAGGAACGGAGGAAGTATGACACAAGGGTTATCATCCAATCACAACGGTCCATCACTAATTCCCTAGAGGGGGCTGCTATAAATCAGCCGGATGATTTCTCGAAGAAATAATCCGCCCATTCAATCCTTGGATTAGCATGCTGGTGGCCGTTGGATCACAACAACTCCACGACAGCAGCGAGCACATCAGGTTCAACACAACGCCATTGAATCCTCGACGAAGCTCCAACGCAGCACTGAGGGCGTCCGGCGAGCGGCCGCC | |||||||||
gi|161422160|gb|EX587306.1|EX587306 HDP29N05w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP29N05, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): GCGGGAAGTTGCAGAGGAGCAGCAAGTTACTGAAAATTCAGTTTACTGCATAATGTTTTAACCAGAACATGAATTAAGATGCAAGAATCATTAAGTTGATAGCAGTCAATGCAAAATTACAGACTGGATGATCCGATGTTGCTCTAATTTGACATCAGTTTGGTCATCTGCGAGCTGGGTCAATCTATTTTGTAGCAGTAGAGGCGGCGAGGAGGAGCTGGGTCACCTCGACAAAGAAGAAGAAGAAATCAAGGAGGAGGACAGATAGACGGGTCGATTAGCAAGAGATTTAATAGAATAAGGGTGTTTTTGTAAAATTGAAAATGTACTAAGCTGAGGACAATTTTTTTCGGCCGGAGGGAGTATTAGACTAGATTGAACTTCTAGGGCATGTTTACTAGATGTGGTACATAAATACCCTTAATTATTCTTATTGTTGTATGTTCAGCAAAGGACAACTTACTAGCAAAAGTTATAACTAATTT | |||||||||
gi|161463662|gb|EX578582.1|EX578582 HDP39H22T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP39H22, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): GAAAATCCCCATAGCATTCACAAGGTCATACAAGGCGGGACTCCGCTCCGCTTACAACCTGAAATCCAAAAGGTTTGACGCAGCCAGCACACACGAGCTAAACATATCAAACCCCTCAAAGATCATCAGAGCGTGATGATCGTTGCTCACGAAAACAGAGCAAACTGAGCAATTGAGAGCTCCAAACTAACTGATAGCATACACAACACACGCATAATCAAACTACACTAGACAGCATCTACGGTCACTTTATATTAGCAGTTCATTCAGGTCGTCGTGGCTCCATCTCCAGCAGTTACCGGGTCTGTGAACAATAGGAGTACAAAGTTAGCTCTACGTTTTACCGTTGAAGAAATAATTACTTACCAAGGTTCACGATTTGCATAATAATAACACATTAAATTATTCCATTTTAATATTAACAACTACTTACAGACCAAAATAAGTGAACAAACACATTAAATTATATACATTTAATTCATAAAAAAGTTAGCACATTCTATATTTACGGACGGAGGGAGTATGTCATTAGCTTTGGTACAATAAGATAGTGGAAGCAGAATTATCAGTTCATAAACGCACCTCGTCAATGGCAGCATCATCATACTCCCCATGCTCTTTCAGTTCCATCGCTTCAACTAAAATGTGGCACCCAGATTCCCCTTCCTGAATCACTCTGCTGGAGT | |||||||||
gi|57827978|gb|CX629191.1|CX629191 GCW001H18r GCW Hordeum vulgare cDNA clone GCW001H18 5-PRIME, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): GCTGCCGCAGCACCGGCACATAGGCATAGACCACTCCTTGCTGTGCTGGGAGCGTTCTTGCCTGTGGAGTATTTTTGGTGTTGAGATGGAGGAAGCCCAACACAAGTATTATATATGATTTAAAGAAAGGCCGATACATTATAACACGCATCAGCTGACGCTGTGTGTTGTGCAGGTGGTGGGCATACACTGTACAATTTTGTATTAAATCAGCTACGCCTATTTTGGGACGGAGGAAGTGTATTAATCTTAGCTCAAGTTCTG | |||||||||
gi|94338424|gb|BY869480.1|BY869480 BY869480 Seminal root Hordeum vulgare subsp. vulgare cDNA clone bart56g01 3', mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): ACGTTCACGGATGCCAACCAGGGCAGCATGCCGATGCCGATGGGCGGCGAGGTCGGCACTGGCGGTGGCGGCGGCATCCAGGGGCAGGGCGTCATCCTCGGGGGCGCAAGCAGCGACGCCTGGCTCGCCAACATGGCCACCGGCGACGTGACGGGTGCGGCAGCGGCACCACGCGCGGCAGCCTCCGCCGCTCGGCTAGTCGCCGCGCCATTGGCGTTGCTCGCGCTCCATCTGCTGCGATAGATGGAGGTCGCCGGAACACTGATTGATCGGTGCAATGTATTCGGGTGAAAAGAAAGAGGGGTTGGCCGTAGGATTAGATTCGGAAACGCCATTGTAACTTTCCGTGTTGATGGGATTTTGCTGTAAGTACGTACTCACTTATTTTGAGACGGAGGAAGTAGATTGTTGGTTAAACTGATGTTTGTTTTAGCTT | |||||||||
gi|161415433|gb|EX590264.1|EX590264 HDP12L23T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12L23, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): CTACTACTCCCTCCGTTCTAAAATTAGTGTCTTAAGCTTAGTACAATTTTGTACTAGACCTAGCGCAAAGTTAAGACAGTTATTTTGGGACGGAGGGAGTATATTATAGTAGTTCATACAAAAACTACCAAGAGAAGCATTACCATAACCCAATCTTACCGTAGTAAACACAACTAACTAGGCCGAGAGGTGGTTCTTGATGTACCTATTAACCCAAACCGTTTTGTGAGGCACGCTAAGCTTGACGAATGCCCTGGCAACGTGAGCATTCTCGCACAAATAAGCATAGTAGTGGGCAAGATGCTCCTGCTCAAACCCCGGGAGGCCCTTCATGTTAGCCCAGAGGCCGTCGGGGACATCGGTGTCTCTCCTACTGCACTTCTCTACGGCTTCTGCTAGGTGATCGAGAACACGGGTCATTGTGCATAGCAGGCTGTCATCGTTCTTCACCTTGGCCTTCTTTGGTGGCGGTGGGGGCGGCAAACTGCCAGAGGAATCACCACTATCTCCTTCATCAGTGTTAGTAAAGGACATTGCAGCCCCTTCAACACCTTTGGCAATAATAAGGCCACCCCCTCCATTCACGTTTTCATTCACG | |||||||||
gi|8904347|gb|BE216735.1|BE216735 HV_CEb0011G06f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTTTTTTATCTATCATCCAAAAACAATTTGGAATTTAAAGATTCTACTAGGAAACTACATACAGATGTTTATAGACATACTTTAGAGTATACATTCACTTATTTTGTTATGTACGTAGTCCACTAGTAAAATCTCTTAAAAGATTTATACTGTATTTAGGAACGGAGGGAGTATTAAGCAGTACGGCTCTTATTTATTTTTATATTTATATTTATATGACCACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACATACGCGTATTATTGGCGGGGGGTGCGACGTAAAGAGGCTTTATGGGCATAAGGAGATGTGGGAGTTATTATCGCCACTGCGTGCGTGAGTGGACACGGCCCTGGGGTGTTGGTGAGCTCGGGTAAACGTGTGCGTAGGAGACGTTCAAGGGATTGGGTATGCTTGGGGAACACAAAAGTCCGCCACACATGAGCAGCCCGCCCAAACACGTGACGTCGAAACTTCCCGGCGCCCCGGGAGAATAGTGGGGCGCACGCACCCTAGTCGCCGTGCGTGAGTAAGCAGCGGGGGCGAATCGCGTGGTACCAGATAATAGCAGGGCGCCGCCGCTCCGAAGACGTGACGGGAAGTAATCGCAGTGCGGCCGCTACACCATGACTGGGGTCGAAAAAGAGTGCGGCGCCCCC | |||||||||
gi|12035729|gb|AL509226.1|AL509226 AL509226 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgar AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): CGGGGGGCTTCTACAAAGACAGCCGGTGCGCGCCAGAAGCAAGAAGGCGAGGGTGGAGCTGCCCGACGACGACGACNAGGACTACCTCATCGTTCCCGATCTTGGATNAGATATCTGAACTGAATGTATAGTTCGTATGTGTGATGTATTCCCTCCGTTCCAAAGTACTTGTCGTGTCTTAGTTCAAGTTTGTCCAAAATACCTGGTTTCAGTTCAAATTTGTACTAAAAGCACGACAAATATTTTGGAACGGATGAAGTATGAGTAAACTAGTGATATGTATGTGTGTATGTATGCAAAGGGATTCTGCAATCCTTTTGTGCCGATCGCTTGGTTGCCGTGGAACATATGAAGCTGCAGGGCGAATCGGGGAAATACTTTCACAAACGAGATGGGTTTATCAGTGTAATATACTTTGAACTGTACNGCTT | |||||||||
gi|161423168|gb|EX591855.1|EX591855 HDP04C10w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP04C10, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): GGGTGAAGGGGTGAACATTTCAGCGAACACGGTACATCCCGGGATCATCGCCACAAGCCTTTTCAGGAACAGGACTATTGTGAGCGTGTCGTTGGTCTAGTATAAAATTTGTACTAACTTAGTACAAATTTTGCGACACTTATTATTCTGGGACGGAGGGAGTATAACCTTACTGCATGTATGCCATTGCAGCTCTGATGAATACTGTTGGAAGAATCATAAGCAGGAGCATCGAACAGGGTGCTGCAACAACATGTTATGTGGCGATGCACCCTCAAGTCCAGGGGATAACTGGTAAATACTTCGGCAATTGTAATATAGCAAACCCAAGCTCGCAAGCTGTAGATGCAGAGTTGGCCAAGAAGCTGTGGAACTTCAGCTTGCAGGTAGTGTCTTCTTGATATGCCGGTTTCAGATAAATAGATTGTTCCGTGTACACTCTAATTTCTGCTACTTCTACATTCAGTTACTTCAGAGCAAGACAGGAGCATGGCTACTGTCAGTTGTAATTATCAATTTCTCTTGGTATTATTTTTGG | |||||||||
gi|161466250|gb|EX600388.1|EX600388 HDP38L17T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP38L17, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): GGCGAGTGACCAATGGTATATTCTTGCAGACTATAATTCCGGACGGAGGAAGTATTTGCAAAAGAGAGTGCGTCACTTTGTATTAGTCTTGCAGTCTGTATATGCTCTATATGCTTTACCTGTACACTATAAATCCCCCTCCCAGCCCAAGCCCATGGCCTTACTACCAAAACTTTACCACCATGGGCAAGAAGAGACAGGGGGAGATTGATCGATCATGCATTCTCCTGCAATTAATCATGCCTTTGGTCACCCACTATTATACGGTTCGCATACACAGGCACCCCAAAATCAAGGATTGGTTTTCGGTCATCCTGGAGATGGGTGGATCAGCACTTCATGTCACGTCATGCGGCAAAGGTCCCATCTACCTCTTGGCTTTCCATCTTCTGTGATCTGCACGTCACCGGCTCTGTCTGGCCTCTTCATGAATCTTGATCTTCGCTTCCTAGCATCTGTGACCTCTTCGACTCCACTGTCATCACAATAAAATAAATCCACCCCTGTTCCTCTATGTATGAACTCTTCACTGTCGTTGTCAGAAGGTAAGACCTCAATAACTTCTTCACTATCTGAGCTGCCAGGATCTGATTCCATG | |||||||||
gi|24284540|gb|CA007558.1|CA007558 HU08F08r HU Hordeum vulgare subsp. vulgare cDNA clone HU08F08 5-PRIME, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTTTTTTGCAATAAGAACACTGTACTGCGCGGGACATGAATTTCGGGACGGAGGGAGTATTCAACCAACAGTCTTTGGTAAGTGAAGAAAAGACGGTTTGATTTTTTGATCTAACCCTCTGTGCACGTTTGGCTACAGATCGAGCCGCGGCGCTCCCGATCCGATTGGGACACGACGGCGGCGGCGCTCCGGGAGGCGAGGAATGGGGGGAAGCGGCGGACGTCGGCGCCAGGCGTATCAGGTAAGGATCCTGTGATGTTGATAGAAAAAAAAACTTTTGTGTGATATTATCTTCCTAGCAGTAAATGATCAGTCATGATCAGACATAATAAGATAAATGTATAACTGAGCTGTTGATTTTCTTCGTGCATGTTCATTATATTTCTAGCAGTAATCGGCAGTTGTGATGATCGGTCAGTTTTCGCATCAAATAGATATTTCTAAACGAAT | |||||||||
gi|161441797|gb|EX572248.1|EX572248 HDP35D10T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP35D10, mRNA sequence AATACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): ATAGACACACATTAGGACAAACTTCGTTGATGACCAATACACATAATTATAGACACACATTAGGACAAACTCACGCTTGACAAAAGTTATTGGTTAGTGACAAGTAAATCAGTTAGTAAGGAAAAGAAAAAAAAAAGATACATCCAACCGAGAGATATTTTTCTTCTTTTGCTACTATCAGGAGAGAGATATTTTCCAATTGTGAGGATGGAGAGACCAGAAGAAATGCACTTGACATTGTACTCCCTCCGTTCCAAGTCATTTAAAAAGATTTTATTAGGGCTCTAAAATATATTTATATACATCTATATGTAAGTCCACTAATGAAACATCTAGAAAAAGATATATTTAGGAACGGAGGAAGTATAAGTAGAATTTTATAAGAACAAAAAAAACTTATTAAGGAATAAGGAAATGGAGGAAGTAATTTTGTTAAAACAGAGATCTGGATGGAAGGAGAAC | |||||||||
gi|24220031|gb|BU969238.1|BU969238 HB10P07r BC Hordeum vulgare subsp. vulgare cDNA clone HB10P07 5-PRIME, mRNA sequence AATACTTCCTCCGTCCCAAAA |