| mature miRNA: AATCGCCAGATGGGATTTCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38574881|gb|CK090556.1|CK090556 F013P49.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F013P49 3', mRNA seque AATCGCCAGATGGGATTTCA EST sequence (targeted fragment marked with yellow): ATGGGCAGATTTTAGTTGCCAATGTTGGTGATTCTAAGGCTCTTTTCATGTCAGAGAAAATCCCATCTGGTGATTCAAGAGTAAATCTTTCAGCTACAGAACTGACATATGATCATCACCCAGAGAGGGAAGATGAGAAGGCAAGAATTAAAACAGCTGGTGGTTCTGTTATTGTATGGGGTGTGCCTAGAGTGAATGGAGTGCTTGCAATGTCTCGGTCCATTGGTGATGTAGCCTTAAAAAGGTTTGGTGTTATAGCCGAGCCTGAGTTTACAGGTTGGAGAGTTTTAACTGCAAATGATAGGTACTTGGTGGTAGCATCTGATGGTATATTTGAGAGCTTGAAACCACAAGATGTAGCTGAGCTGATATTTGAATGGAATTTAATTCCTGAAAGGAGAGAAGAATCAAAGCTTCCACTTTCATGCATGTTTTTTGAATCGCTGGCAGAGTGTATAATAACAATTGCATATGAGAAAGGGAGTCATGATAACTTGTCTGCTATTGTAGTTCCTTTGTGATAGAGAGCTTTTATGACTCGACAAAGAGAAAACACTGATCACTTGGGTTGAAGAGGTGGTTGCACAGAATTTTGCGAGATAAGGTACTGGGAGAAATACAGTTCTGAAACTGTATTCGACAAGAACCTGTGGGTAGATAGATGTGTAGTTCTAGAGAGTCTATTTGAATGCTTTCTTGGGCATGTTTTCCTCCGCCATTTGAGAGCATTTTGGCATGTTAACGATGCTTGTATCAAACTTTAGAATGAAAGACCTTTGGTCCCCTTTTTTTTTCCCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|52498198|gb|CV245223.1|CV245223 WS0256.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_N02 3', mRNA sequence AATCGCCAGATGGGATTTCA EST sequence (targeted fragment marked with yellow): TTCAACCGGAATCGTTTGATGCCCTTGATGTCTGCCATTGTTCTAGAGGAACATCCGGGAACAACCATTGTTACAGACAGTGTGACTTCAGATGGCCTGACAACGTTTATTGAAAAGAAACTCGGGGGAAAGCACCATCGGTTCAAAAGAGGCTATAAAAATGTCATTGATGAGGCTGTTCGTCTGAACTCTGTTGGTGAGGAATCACATCTGGCCATTGAAACCAGTGGCCATGGAGCTCTGAGAGAAAACCACTGGCTTGATGATGGAGCATACCTCATGGTTAAAGTTTTAAATAAACTGGCTTCAGCTAGAGCTTCTGGAATTGCTGGCGGCAGCAAAGTTTTGACTGATCTGGTAGAGGGTCTGCAGGAACCAGGAGTAGCTGTGGAATTGAGATTGAAAATCGATCAGAACCATCCAGATCTTAAAGGAGGATCTTTCCGAGAATATGGAGAGGCAGTGCTGCAACTTTTGGAGAATCATATAGAGTCAGATCCAAAGCTTCAGAAAGCTCCTGTTAACTATGAAGGGGTTCGAGCTTCTGGTTTTGGTGGGTGGTTCCTTCTTAGACTCTCACTTCATGATCCCGTTCTTCCCCTTAACATCGAGGCAACTAACCATGAAGATGCTGTGAAACTTGGACTCGCTGTCTCCTCTGCTGTCAAGGAATTCCATGCATTGGATACGTCTGCCTTGGATAAGTTTATCCAAACATAATTAGTTGAGTTTCGAGTTGCAGCCTTTCAGTTTCCATGTGCAAGACTTTTTGTTTAAGTCGGCATCCCTTCAGAGTGGGTTATCTGCGGAGAAGCAAAACACCGGGTGCTTCGGAGTCTTTCTCGTTAGATCTGATTTTGATGAGATATTAATAAATATTGAGTGACGAGGACCTTTTGTCCATAATAATAAATTGCAGTCTTTGGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52396291|gb|CV236571.1|CV236571 WS01224.B21.1_J17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_J17 3', mRNA sequence AATCGCCAGATGGGATTTCA EST sequence (targeted fragment marked with yellow): GGGCAGCAGGGATTCGTGATGAGAGTGGAAGGCAACTGGGTGATAGAATCAGCCTAAATGAGCAATTGCTGAATCATGTTACTACATTGAGTCGCTTGATTCAATTACTAGGGACTAAGCAGGCAGCAGAAAATTACCTTAATAAGTGCTTGTATTATGTCAGCTTGGGCAGTAATGACTACTTAAACAACTACTTCATGCCTAGCAATTATACAACAAGCCGATTATACACCCCTGATCAATATGCCAAGGTTTTAATTGACCAGTATAGTCAGCAAATAAAGCTTCTGTACCTCCTAGGAGCCAGGAAAATTGCCTTGCCTGGACTTGGACCAATAGGCAGCATTCCTTACTCATTTTCTACTCTATGCCGCAACAATATCTCTTGTGTGACCAATATAAACAACGCCGTCCTCCCTTTTAACTCAGGACTCGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACTTGAATTCTACTGGGATGTCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTGTAAACGTTGGATGTTGTCCAGCACGTGGTGATGGCCAATGCATTCAAGACTCAACCCCATGCCAAAATAGGACTGAATATGTGTTTTGGGATGCAATTCATCCTACCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCTTTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATTTATAGAAATAATGTGGTCTTGGTCACTTTGTTACGATGATAAAATTATGTAAAACAGCAGTCTAATAATACGACTTCTTGACATAAAAAAAAAAAAAAAA | |||||||||
gi|52395182|gb|CV236017.1|CV236017 WS01222.B21_H24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01222_H24 3', mRNA sequence AATCGCCAGATGGGATTTCA EST sequence (targeted fragment marked with yellow): ATATAAACAAAGCAGTCCTCCTTTTAACGCAGGACTTGTATCACTTGTTGATCAACTGAATAGAGAGTTGAATGACGCACGCTTTATATACCTGAATTCTACTGGGATGTCATCTGGCGATCCTTCTGTGCTCGGGTTTAGGGTTACAAACGTTGGATGTTGTCCAGCACGTAGTGATGGCCAATGCATTCAAGACCCATGCCAAAATAGGACTGAATATGCGTTTTGGGATGCAATTCATCCTTCCGAAGCTTTGAACCAATTCACTGCAAGAAGATCGTACAATGCCATTCTTCCATCTGATGCTTATCCAACCGATATCAGTCATTTAATCAGTTAACATGCAGATCTAAGTCAAGGAAGATAATATTCCATAAATAATTTAATAAATAATTTATAGAAAATAAGGTGGTCTTGGTCACTTTGTTACGATGATAAAATTATGCAAAACAGCAGTCTAATAATATGACTTCTTGTAAACGAAAAAAAAAAAAAAAA | |||||||||