| mature miRNA: AATGCTCATATGCATCACAAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30069329|gb|CB867353.1|CB867353 HC04D14w CH Hordeum vulgare cDNA clone HC04D14 5-PRIME, mRNA sequence AATGCTCATATGCATCACAAT EST sequence (targeted fragment marked with yellow): CACGCGTCCGGTGAACTTTTAAGAAATCTGCACTTCAGGCTTGGTCTGCCCTTGGATCGTCCTTTATTAGGACTTCCAATGCACTGACTTTTGGTGGCATGGAAAGGCGAGATAGAAGCTCATCAAAAAGTGGTTCTGATTGCTTCGAGATGTCCACAAAGAAATTCCATCTAGTGGTGTATCTGGAGGAATCACGTCATTGATTGAGGTTCATATGAGTATTACCATTACCTACATGATGGTATCGATGACAATGGATGGGGATGTGCTTACCGTCCCTACAAACAATCATGTCTTGGTACAGGCTGCAACAGTATTCATCTATAAATGTTCCTTCACACAGGGGATTCAGCAAGTTCTTGTTGAAATTGGTGACAAGGATCCATCATTTATTGGATCTCGGGAATGGATTGGGCGATAGAATTAAGCTTTGTGCTTGACAAACTGCTTGGTGCTAGTTGCAAGATAATTAACGTGAGATCTGTGATGAGCTTCCTGAGAAATGCAGAGAACTTGCAATACATTTTGAAACCCAGGGAACTCCTGTAATGATGGTGGTGGAGTTTTGGCTTATACCCTTCTGGGAGTTGATTACAACGAAGTCAGTGGTGATTGTGCTTTCTCATCCTTGATCCACACTACACTGGTGGTGATGAC | |||||||||
gi|30069327|gb|CB867351.1|CB867351 HC04D12w CH Hordeum vulgare cDNA clone HC04D12 5-PRIME, mRNA sequence AATGCTCATATGCATCACAAT EST sequence (targeted fragment marked with yellow): CACGCGTCCGGTGAACTGAGAAGAAATCTGCACTTCAGGCTTGGTCTGCCCTTGGATCGTCCTTTATTAGGACTTCCAATGCACTGACTTTTGGTGGCATGGAAAGGCGAGATAGAAGCTCATCAAAAAGTGGTTCTGATTGCTTCGAGATGTCCACAAAGAAATTCCATCTAGCGGTGTATCTGGAGGAATCACGTCATTGATTGAGGTTCATATGAGTATTACCATTACCTACATGATGGTATCGATGACAATGGATGGGGATGTGCTTACCGTCCCTACAAACAATCATGTCTTGGTACAGGCTGCAACAGTATTCATCTATAAATGTTCCTTCACACAGGGGATTCAGCAAGTTCTTGTTGAAATTGGTGACAAGGATCCATCATTTATTGGATCTCGGGAATGGATTGGGCGATAGAATTAAGCTTTGTGCTTGACAAACTGCTTGGTGCTAGTTGCAAGATAATTAACGTGAGATCTGTGATGAGCTTCCTGAGAAATGCAGAGAACTTGCAATACATTTTGAAACCCAGGGAACTCCTGAATGATGGGGTGGAGTTTTGGCTTATACCCTTCTGGGAGTTGATTACAACGAAGTCAGTGGTGATTGTGCTTTTCCATCCTTGATCCACACTACACTGGTGGTGATGACCTCAAGAAGATTGTTAATGGTGGATGGTGTGC | |||||||||
gi|161454887|gb|EX577707.1|EX577707 HDP02E05T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP02E05, mRNA sequence AATGCTCATATGCATCACAAT EST sequence (targeted fragment marked with yellow): ATATTAATTTGACTACATAGAACATATCTATGGATAATATTACACCATAGCATTTGCATTAATTCAAACAAAGAAAATGATCTTGTGCATGATATTACATTTTTTTCATCTATCAATGGAAACTGCGGTTATTGCTAAGTAAAATTCTCTAATTTTATTTGCTTCTTGATCCAATCGGAGAATTCAGCTGCAACTCAACTCAATTATCCTTCACCAAGTTGACGCAAATATGTTGAAGTCTTGGAAACTGTACTTCAGAAGCAACCTATATTGTGATCAATATTAGCATTTGATAAGAATGATAATAGAAGTTGCATGAGTAATATGTCGATGGATACATGTACATAGTCATAGTTCAGGAAGATTGTCATGACCATTGACCTTGTTAGTGATACACATTCAGGATACAAGTGGGACTAATAGCAGGATGCCCACATCTGCACAATCTGCTATCCGGGGTGTTCATGGGCAGCCTGCCATCAAGCATATTGC | |||||||||
gi|30056514|gb|CB861955.1|CB861955 HH06I03y HH Hordeum vulgare cDNA clone HH06I03 3-PRIME, mRNA sequence AATGCTCATATGCATCACAAT EST sequence (targeted fragment marked with yellow): AGCAAAATTTACCACAAGAGTTGCTCTTCAATGCCTAGAACTACATTGATACGAACAGAAAAAGCTTACACAAACTGATTGGATCAAACTTGTTTCCTAGGTTTGGGAAACTCATTTCATCTTGTGCTCTTGACATCGTATCCGATAATTGTCCCACAAGAGCATCACAGCTTATTCCCTTGTACTAGCATATACTTGAGATTGCCATTGTGATGCATATGAGCATTTGACGATTCATTCGTTATTACTCCCCATACTATCATACGCATCACAATTACAATTGGCACCAGGAGCAACTTGGATGAGCTACACAATACTGAGATGAAAATAAATAAAGAGGTTGACTTGCAAAGTTCTCCGAAAGGAGGAACTTGTTTTATGCATCTTCTCCCTGCTTCTCGATTTACAACCGCAAAAGATTCACACAAAGCCTACAGCTACGACTACAGAAGCGGACGCGTG | |||||||||