| mature miRNA: AATGGGACGGAGGGAGTATTA species: Parthenium argentatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|294701584|gb|GW785449.1|GW785449 PBC080B12_09877 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg AATGGGACGGAGGGAGTATTA EST sequence (targeted fragment marked with yellow): CTTGGGGATCTGTTAAGCCCACTGGCTATTGAAGGTCCTCCTGGTGTATCTCCTCAATCAGAGCCTAATGGTGTTCATTCTCATGAAGATACACTTGGTGCAAATGATGCTTTAGCCCTTGCACCTGTTGGAGACCAAGAATCTACTGTCAAGCCAATTGGAGATATTGCAGAAAGATTTCAGGCTTTGTGCCTTAAAGATAGTGGAGTACTCTATGAAGATCCGTATGTTCAGATTGGTATCAAAGCAGAATGGCGAGGTCACCAGGGCCGTATGGTACTCTTCTTGGGGAACAAGAATACTGCTCCACTTGATTCTGTTCAAGCAGTAATATTACCTCCTTCCCATTTAAAGTTGGACATCTCTCTAGTACCAGAAATTATTCCTCCACGAGCACAGGTCCAATGCCCACTTGAAGTCGTAAATCTCCGTCCAAGTAGGGACGTTGCTGTTCTTGATTTCTCTTACAAGTTTGGAACTTATTTGGTCAATAATAGACTTCGGCTTCCTGCAGTCCTGAACAAATTTCTTCAGCCTATTCAAGTATCAGCTGAAGAATTTTTCCCTCAGTGGAGATCAATGCCTGGACCTCCAATGAAACTTC | |||||||||
gi|294687354|gb|GW778022.1|GW778022 PAB933F06_02450 Parthenium argentatum cold acclimated bark cDNA library (PAB) Parthenium arg AATGGGACGGAGGGAGTATTA EST sequence (targeted fragment marked with yellow): TTGAACCATAGTTTGTAATCCTTGTATTATTTTTATAAAAAGCGGTTGGACTATGCTGTGCTCTCGTCTTCGGATTATGCCTTCATGATTTATATCAAAAACCATTATGGTTATTGTTGGTCATGCAGAACAATCATCTTTTATTACTACCTCCGTCCCATTTAAAGTGTCATATTTTGAATTTTCAAAGTCTTTATTTATAAACTTTGACCTTAAATAATTTTGTTTGCGTTCGATAATACTTGATGAAAGTTATATGATTCGAGTGTGTTTTAGAAGTGTTTTTATCGGTATAATTTTCATCAAGTTTTATATAACACAAAAAATACATAATTAAGGTCAAAGTATATAAATAAAGACTTTGAAAATTCAAAATAGGACACTTTTAATGGGACGGAGGGAGTATTATTATTATTATTATTATTATTATTATCATTATTATTATTATTATTATTTTGGGATGCAGGTCGATGGTGGTTTGGGCCCTTCGACCATCGACATGGCAGCTGCTGCAGGTGCAAACTGCATTGTTGCTGGCAGTTCAGTGTTTGGAGCTCCAGAGCCAGCTCAAGTTATATCATTACTCAGAATAAGTGTTAACAAGGCGCAAGTAACTGGTTGACCATGTATGTCGCCTTAACCTTCTGAATGGTTTGAGTCAGCAGCGCGTGTGCTATGTACACTTAATACCTGAATACATGAT | |||||||||