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mature miRNA: AATTCACAGGCCCTATCTTGTG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|218489500|gb|FG958298.1|FG958298 MA_PA64s_06109 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s

AATTCACAGGCCCTATCTTGTG
|| |||||||| |||||||||
TTTAGTGTCCGTGATAGAACAG

EST sequence (targeted fragment marked with yellow):
ATTCCTACCGTTTCCTTNCTGCGTGTGGGCTGGATGCTCTGCTCGTGTGCTGGTTCTTCGTGCACCTCTCATGTAACAGCGAGCAGGGCCTCACTCTACTACTACTGTTTTTGTTTTTTAACTTTCACGGTTTCACCACGTACCCGAGTGTGATGGTTTTAATGGAACAAGTAATAAATCAGTTTAATTTCCTTTCAAAAAAAAAAAAAAAACTCGGACTAATTCTCGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATA