| mature miRNA: AATTCGGTTCGGTTCGGTTCT species: Actinidia deliciosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195254908|gb|FG471361.1|FG471361 011124KALA001408HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CACCATTCGTCCATACAAACCCTCTCTTGTTCTTCTCTCCTCTGCGACGTCCGAGGCGAGCCGAACCGAACCGAACGCAGGGGTTTTCATTTCCAAGACATAATGGCTGATCAGTACCAGCACCCAACCATCGCTCAGAAGGTAGCTGGCCAGCTTCATCTCAGTTCCAATGCCCATATGCGCTACGGGGGCTATCAGAAGCCTGCTCCTTACCAGAGACGGTTTTCGTATGGGAACTTTGCACTGCAGTATCCCATGACACAAACATGCCAAACTACCCAGGATCTGTCATTGGTTGCTGCAAATGCTTCACCTGTGTTTGTCCAAGCTCCCTCTGAGAAGGGCATTGCAGGATTCGCCATTGATTTTCTTATGGGAGGAGTTTCAGCTGCTGTGTCCAAAACTGCTGCCGCTCCTATTGAGCGCGTGAAGCTATTGATCCAAAACCAGGATGAAATGATTAAGACTGGTCGCCTAGCTGAACCCTACAAAGGAATTGGGGAGTGTTTCAGTCGAACGATTAAAGATGAGGGATTTGGATCATTGTGGAGAGGGAATACTGCTAATGTCATCC | |||||||||
gi|195241110|gb|FG416034.1|FG416034 000716KUBA012143HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01214, mR AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CGGTTCTCCATTTTTAAACCCAGAACCAAAATGATCGTCCACAGGAATCGAACCGAACCTACCCGAGTGAGATTGATTCGGTTCTTCAATTCTTTTTTAAAATAAGCCACCATGAGTAATAATAGTATATGATGAGTGCACTGTATTACTATATGATCGAGTCTAAACTTTGGTTCCTTATTCGGTTCGGTTTGATTCTGGGTAAAAATTCTTATAGACCCGAGAACCGAACCGAACCGAACCGGACGGGTCTACAATTTTTAGAATCGAATCATGAGCGTGATAGAACCGAATCAAACCAACCCAATAAAATCCGATTGATTCGGGTCTCGATTCTTTCGTGGATTTTATGCACCCCTACATCGGCATACTTTACCCAAGATTGTTCTTGTGGGATATATTCCTAATAATTGAACGTAGCATTTTGGAGTGGTATTGATAAATTCATTTATAAAGATCAAAGTTGAAAAAGAAACAAATTCAACTTCTAATGGCCAAAGAACTACGCAATCTTTTTTTTTTTTAATGTATTGTCAACATCTAGATGTCCAACTTCAAACCGAAACAGAGTATAAGTCAGTTTTTCACACACAAAAAAA | |||||||||
gi|195254268|gb|FG416373.1|FG416373 000716KUBA012621HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01262, mR AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CGGTTCTCCATTTTTAAACCCAGAACCAAAATGATCGTCCAAAGGAATCGAACCGAACCTACCCGAGTGAGATTGATTCGGTTCTTCAATTCTTTTTTAAAATAAGCCACCATGAGTAATAATAGTATATGATGAGTGCACTGTATTACTATATGATCGAGTCTAAACTTTGGTTCCTTATTCGGTTCGGTTTGATTCTGGGTAAAAATTCTTATAGACCCGAGAACCGAACCGAACCGAACCGGACGGGTCTACAAATTTCAGAATCGAATCATGAGCGTGATAGAACCGAATCAAA | |||||||||
gi|195268949|gb|FG416611.1|FG416611 000716KUBA012949HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01294, mR AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CGGTTCTCCATTTTTAAACCCAGAACCAAAATGATCGTCCAAAGGAATCGAACCGAACCTACCCGAGTGAGATTGATTCGGTTCTTCAATTCTTTTTTAAAATAAGCCACCATGAGTAATAATAGTATATGATGAGTGCACTGTATTACTATATGATCGAGTCTAAACTTTGGTTCCTTATTCGGTTCGGTTTGATTCTGGGTAAAAATTCTTATAGACCCGAGAACCGAACCGAACCGAACCGGACGGGTCTACAATTTTCAGAATCGAATCATGAGCGTGATAGAACC | |||||||||
gi|195202549|gb|FG473802.1|FG473802 020209KALA004123HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CGAGCCGAACCGAACCGAACGCAGGGGTTTTCATTTCCAAGACATAATGGCTGATCAGTACCAGCACCCAACCATCGCTCAGAAGGTAGCTGGCCAGCTTCATCTCAGTTCCAATGCCCATATGCGCTACGGGGGCTATCAGAAGCCTGCTCCTTACCAGAGACGGTTTTCGTATGGGAACTTTGCACTGCAGTATCCCATGACACAAACATGCCAAACTACCCAGGATCTGTCATTGGTTGCTGCAAATGCTTCACCTGTGTTTGTCCAAGCTCCCTCTGAGAAGGGCATTGCAGGATTCGCCATTGATTTTCTTATGGGAGGAGTTTCAACTGCTGTGTCCAAAACTGCTGCCGCTCCTATTGAGCGCGTGAAGCCTTTGATCCAAAACCAGGATGAAATGATCAAGACTGGTCGCCTATCTTAACCCTAC | |||||||||
gi|195315011|gb|FG468813.1|FG468813 020216KAKA005188HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): AGACTTCTCTCTTCGTCTCTTCCAACTTTCAACACGGACTTTTTAGGGCATATATATGTGTGTATATATACAGATCTCTCGTATTCTCTCTCTGTGTATGTATATGTATATCTATAAGACGCTCTCAATTCTGAAAGAGTCTTCGTAATATTCTTTACGAAATTGCGAGTGTTTTTGTTTTCGAATCGAATCGAATCGAATATGGATTCTGATTCGTGGACCACTCGCCTCGCTGCTGCCTCCAGACGCTACCATTCTCGATCTGATCTGTATTACGGAGGAGATGACATGGATGGTGATGACGAATCGAGGCCGGAGTTTATGTGCCCTTTCTGTGCGGAGGATTTTGACGTTGTTGGGCTTTGTTGTCATATCGATGAAGAGCATGCCGTTGAAGCGAATAATAGGGTATGCCCGGTTTGTGCAAAAAGAGTGGGGATGGATTTGGTTGGCCATATTACCATGCAACATGGAAATCTTTTAAAGGTGCAGCGCAAGAGGAGATATCGCAAGCATGGATCTAATTTGTCATTNTCTATATTGAAAAAAGAACTGCGCAATGGAAATCTACAATCACTTCTTCGTGGGTCTCAGTACTT | |||||||||
gi|195209002|gb|FG451684.1|FG451684 010602KAFB005823HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): GCTAGTCTAAAAATTTCAGTTTTTAAAATGAAAAAACGAAAATTTTCCTACACTACTATAAACCTGACTGAATTGAACTGAACCTAATCGAATCGAATTAACTACATATATATTACTAGATTTAAATTCGGCCGTTCATATATACCATACTTTTTAATCTAAGCTTGTGCTGATTAGCTATTGCTTTCTTTCTTTTTTCTTTTCGTAAGTGTTGGATTTCTTAAAAAATTGAGAAACCGAACCGAATTTTTTCTAACTGAATGGTTCATTTCTCTATTAAAAAAATATGTTTTAATTTCATAATTCTAAAAAAAAGATTGATTAAAAGTTATATATATTTTTAAATCGATCCAACCGAACCAATTGTACACGCTTTAACGGCTCGATAGGGGGAAAGCCAAACTGTCCCTCATCTAGATTGCACCAATAACACTAAGCCAACTCAACCCCCAAAATCTACACTCTCTCATTCACATCCTCACAATCATCTCATCCTAACCTCCATAAAAAAGGAAACATCATCCTCTCTCTCTCTCTACGCACAACAATCTCATCGTCTCTCTCCACCCCACCCCCCCAAATCAGAACTCCCATCACCTCAATCACCATGGCCTCTGCCTTACTCACCACACCCACCTTCCTCTCCCTCAAACCCCTCCACAAGCCCACCCACTCCACAGCGTTTCTCTCCACACCCACCACCCTCAAACGGGCCCCAAACGGGCCAATTTCGCCATC | |||||||||
gi|195206433|gb|FG407693.1|FG407693 000729KAAA006913HT (KAAA) A. deliciosa developing shoot buds Actinidia deliciosa cDNA clone AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): AGAGACTCTCTCTCTCTCTCTCTCTCTCTCTTCCAACTTTCAGCACGGACCTTTCAGGGCATAGATATGTGTATGTGTATATACAGATCTCTCGTATTCTCCCTCTGTATATGCATATCTATATCTATAAGACACTCTCAACTCTGAAAGAGTCATCGTAATTTACTTTTACGAAATTGCGAGTGCTTTTGTTTTTGTTTTCGAATCGAATCGAATCGAATCGAAAATGGATTCTGATTCGTGGACCACTCGCCTTTCTGCTGCCTCCAGACGCTACCATTCTCGATCTGATCTGTATTACGGAGGAGATGACATTGATGGTGATGAGGAATCGAGGCCAGAGTTTATGTGCCCTTTCTGTG | |||||||||
gi|195240621|gb|FG412419.1|FG412419 021022KAAA013505HT (KAAA) A. deliciosa developing shoot buds Actinidia deliciosa cDNA clone AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CTCTCCTCTGCGACGTCCGAGGCGAGCCGAACCGAACCGAACGCAGGGGTTTTCATTTCCAAGACATAATGGCTGATCAGTACCAGCACCCAACCATCGCTCAGAAGGTAGCTGGCCAGCTTCATCTCAGTTCCAATGCCCATATGCGCTACGGGGGCTATCAGAAGCCTGCTCCTTACCAGAGACGGTTTTCGTATGGGAACTTTGCACTGCAGTATCCCATGACACAAACATGCCAAACTACCCAGGATCTGTCATTGGTTGCTGCAAATGCTTCACCTGTGTTTGTCCAAGCTCCCTCTGAGAAGGGCATTGCAGGATTCGCCATTGATTTTCTTATGGGAGGAGTTTCAGCTGCTGTGTCCAAAACTGCTGCCGCTCCTATTGAGCGCGTGAAGCTATTGATCCAAAACCAGGATGAAATGATTAAGACTGGTCGCCTAGCTGAACCCTACAAAGGAATTGGGGAGTGTTTCAGTCGAACGATTAAAGATGAGGGATTTGGATCATTGTGGAGAGGGAATACTGCTAATGTCATCCGTTATTTCCCCACCCAGGCTTTGAACTTTGCATTCAAGGATTACTTT | |||||||||
gi|195220073|gb|FG442966.1|FG442966 001203KADA006124HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon AATTCGGTTCGGTTCGGTTCT EST sequence (targeted fragment marked with yellow): CCGATACGAGCCGAACCGAACCGAACGCATGGGGGGTCATTTGCAAGACATAAGGCTGACAGTACCAGCACCCAACCATCGCTCAGAAGGTAGCTGGCCAGCTACATCTCAGTTCCAATGCCCATATGCGCTACGGGGGCTATCAGAAGCCTGCTCCTTACCANAGACGGNTTTCGTATGGGAACTTTGCACTGCAGTNTCCCATGACACANACATGCCAAACTACCCACGATCTGTCATTGGTTGCTGCAAATGCTTCACCTGTGTTT | |||||||||