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mature miRNA: AATTGGGACAGAGGGAGTATT
species: Solanum tuberosum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|115271589|gb|EG009825.1|EG009825 SSBN003J18u SSBN Solanum tuberosum cDNA clone SSBN003J18, mRNA sequence 

AATTGGGACAGAGGGAGTATT
 | |||||||||.||||.||.
GTTACCCTGTCTTCCTCGTAG

EST sequence (targeted fragment marked with yellow):
GCTCGAGCGGCCGCTGCTTGTTACGTATAAAGGCTTTGTTCTCCCAGATGTAATACTGGTTAAGAAGAGCTATGAAGAGAAATGGCAGAAGAAGCGTGGGAAGCCTCGTTCACGGAAGCTGAAATCTCTCAATATGGAGATTGATGACAATGTTAAGGGTAGAGATCATGAAGAGAAGATGAACTCTGAGTATGAACAATTCTTAAGAGATTTAGAGGAGAATCCAGATTTGAGGTTCAACATATCTCTTTATCGTAACAAGGAGTATCAGCCATCAGAAATGGCATCTGTGACTGATGGCGATGATGCTCCTTCTGTCCCATTGGAAGAATTGTTAGCTGATCTTGATTTAAGTGAGGCGGAAGATGATAAAGCAAGCACATGTCCGAGTACTTGACTCACTCCCTCATGCTATCATT