| mature miRNA: ACACAAAAGATTCGTCTCGCG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88489773|gb|CI427045.1|CI427045 CI427045 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (4min), aft ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GGACACATGCATATAGCATTAAATGTGGACGAAAAAAAATCAATTGTACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCCTAATTGCGCCGTGATTTGACAATGTGGTGCTACAGTAAACATTTGCTAATGACGAATTAATTAGGCTTAATAAACTCGTCTCGCAGTTTACAGGTAGAATCTATAATTTGTTTTGTTATTAGCATCTTTACAGGCGAAATATGTAAAATTTTGGCCGAACATCTTAAACACGGCATCAGTTATTCTTGAAGCACTAGGCTGCGTATATTTTTATGGACGATATAGAAGAAAATCTGTACCATAACTCTAAATTTTTTTATGCTGAGGATATACAACTGCAAAAAGCCTGCATTCTGCCAACAGAAGACAGGGTGCACGATGCTGATTTTTTAAGAATCAAAAGAATTAT | |||||||||
gi|89195330|gb|CI051443.1|CI051443 CI051443 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): CTCATAAAATCACATCATTTTACTTTACATTTGAACATCATTCTACAAATCATTTTAATTTAAATCATATCAACTTATGAAAACTTATGTTTATGTAATATTTATGTAAGCTTATGTTGGTTAAGCTATCTTACACATTATTTCGACTTATTGTTATCATAGTAAATTCCTGCAATAACGTGTGGGTTTCACCTAGTTATTAATGTAGGAGTGCTGACAATCATTTTGCTTTCTTTCATAAAACAGTTACAGCCTTGTTTATTTCGTGAAAAAAAAATTTGGGTGTCACATCGGATGTTTGATTGGATGTTGGAAGGTGTTTTCGGACACGAAAGAAAAAACTAATTTCATAACTCGCCCAGAAACCGCAAGACGGATCTTTTGGGCCTAATTAAGCCGTCATTAGCACATGTGGGGTACTGTAGCACTTATGGCTAATCATGAACTAATTAGGCTCAAAAGATTCGTCTCGCGATTTCCGTGCAAACTGTGCAATTAGTTTTGTTTTTATCTATATTTAATGTCTCATGCATGTGTCCAAAGATTCGATGTGACATTT | |||||||||
gi|86259685|gb|CI065558.1|CI065558 CI065558 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): CGAACACAAATTAAAAAACTAATTTCATAACTCGCCTGGAAACCGTGAAACGAATCTTTTGAGACTAATTAATCCACCATTAGCACATGTGGGTTACTGTAGCACTTATGGCTAATCATGGACTAATTAGGCTCAAAAGATTCGTCTCGTGATTTCCATCATAACTGTCCAATTAGTTTTTTTTATCTATATTTAATGCTCCATACATGTCTACAAGGATTCGATGTGATTTTTTTGAGAAAAACTTTTTGGGAACTAAACATGCCCTAAATGTTCAGTTTACTGTGAACAGGAACGCGAAAACGACCGCTACACTTCAACAACGTCAACCTCCGACAACTCAACGCTGGAGACACCATCGGGGCAGAGGATCGACAGCACGCTGACCGTCTTGTGCTGTGGAATCTGACTTATCTTGAGCCGATCTTCATCGCTCAATTGCCAATCGAAGATATCGATGTTCTCCTTAAGCCTCTCCCTTTTCGTACTCGTGGTCACCATGCTTGCTCCTTGCTCGTAGATCCACCTAAGTGAGATCTGAGCC | |||||||||
gi|88967048|gb|CI392010.1|CI392010 CI392010 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): ATGGACATATGCATGGGGCATTAAATGTGGGAAAAAAAACCAATTGCACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCCTAATTACGTCATGATTTAACAATGTGATGCTACAGTAAACATTTGCTAATGATGGATTAATTAGGCTTAATAAATCTGTCTCACAGTTTAAAAGCGGAATCTATAATTTGTTTTGTTATTAGTCTACGTTTGCTATTCGTCTGGCTTGTTTTCATACGGCGTTCATTGTACCTTTGAATGTCGAGAGTGGGACAGTTGGGGTGGGAAACCGCTGCAGCCCTGGCGTCATCCTCCGAAGACTCCACCTCGGCAGCAACGGCACCATTACAGTTGAATACAAGAGCGATAGACTTGAGGGCTGAAAGATGGTGCAGCCCAACAACCGGACCACCATGGACATCGAGCTGCCACCTTGC | |||||||||
gi|58031282|gb|CX728825.1|CX728825 OSJNEf13P11.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf13P11 3', mRNA sequence ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): CAATAGACGGGCAAATCGTTGGTGCCTGGATCAACCTCGTATAGCAACTTCACAATGGACATATTCGGGCGAACGCTTTGCCATGTCCACGGCAGGCGATGACTAGCTAGGGCAGCTAGTTACGATCTACAAAGTAATTGATTTCTTGTGTGAGGCCTTGTTTAGATCTCAAACGTCACATCAAATGTTTGGACACATGTATGGAGCATTAAATGTGGGGGAAAAAAACAATTACACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCATAATTACGCCATGATTTGACAATATTATGCTACAGTAAATATTTGCCAACGACAGACTAATTATGCTTAATAAATAAGGCTCACAGTTTACATGCGGAATCTGTA | |||||||||
gi|29625997|gb|CB631008.1|CB631008 OSIIEb08E16.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb08E16 3', mRNA sequence ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTAGGTCCATCCAAATGTCCCATGTTTGCTGTTTACTCCAATCTGCCCGCACTCATTGTCATTTAGACTTGTCATCCTTCCTGATTTCTGCACGACTTGAATTGAAGAGGATTTATCAAAAGCTATTAATTTGGTGCAAACGCGAAGAAATCTGGTTGAGAATGATCGTGTTTTGTTAAACCCTGCACATCGTGCTCAACAGGAATATGAAAGGGTGGCCAGCTGCTGTCTTAGTGGTGAACAAGAAAAGATGGTATCAGAACGGTGTTTGTCAGAACTGAGAAATGCAGTTCAAGAGGCTCAGATGTTTTGAGGATTGCCACCCTGTTAGGGGTTTGAGTTGACTGAACGTCGCCGGTTTTTACTGTTTTCCACTCGGTTCTCAGCAAACAGGTGGGGAGCAGTTTTCACTTCCAAAATGGTTGATGAATGGCATGAACAACCAGCAGCAATAGGCGTTGACTGGGTGACAATAGACGGGCAAATCGTTGGTGCCTGGATCACCCTCGTATAGCAACTTCACAATGGACATATTCGGGCGAACGCTTTGCCATGTCCACGGCAGGCGATGACTAGCTAGGGCAGCTAGTTACGATCTACAAAGTAATTGATTTCTTGTGTGAGGCCTTGTTTAGATCTCAAACGTCACATCAAATGTTTGGACACATGTATGGAGCATTAAATGTGGGGGAAAAAAACAATTACCCAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCATAATTACGCCATAATTTGACAATATTATGCTCCAGTAAATATTTGCC | |||||||||
gi|89195977|gb|CI395395.1|CI395395 CI395395 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): AAAACAATTGCACAGCTTTGCATGTAAATTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCGTTAATAAATTCGTCTCACAGTCGATAGACGGAATTTATAATTTGTTTTGTTATTAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGGGACGTGTTGTCAGCTAGTATAATCAAAATCAAGTGTAGGTGTTGGCGACGTCGGCGAGGTGCCCGGCGAGCTCCACCGGCGCGGAGAACATGGCCATGTGGTCGGGGCCGGCGATTTCCCTCACCTCCTCTACGGGGAAGCCGGCGATCATCGGCCGGTGGTAGGC | |||||||||
gi|88508195|gb|CI435701.1|CI435701 CI435701 Oryza sativa (japonica cultivar-group) callus suspension-cultured cells treated with ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GAAAAAACAATTGCACAGTTTGCATGTAAATTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGTCTCACAGTTGATAGACGGAATTTATAATTTGTTTTGTCATNAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGNGACCTGTTGTCACCTACT | |||||||||
gi|29624885|gb|CB629896.1|CB629896 OSIIEb06H22.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06H22 5', mRNA sequence ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): ACAAAGGCATGGTTTATATTTAAACTTTTTTCTTCAAACTTTCAACTTTTCCGTCACATCAAATGTTTGAATACATATATGGAGCATTAAATATGGACGAAAAAAACCAATTACACAGTTTGCATGTAAATTGCGAAACGAATCTTTTGAGCCTAATTACGTCTTGATTTGACAATGGGGGGCTACAGTAAACATTTGCTAATGACGAATTAATTAGGCTTAATAAATTCGTCTCGCAGTTTACAGGCGAAATCTGTAATCTGTTTTGTTATTAGTCTACGTTTAATACTTCAAATGGGTCCGTATACTTCAAAAATTTTATTTTGGCACACGAACTAAACACAGCCAAACTCAACAAAATTATTCAGCAATGTTATCTCTACAAAAAATGATGCAACATTTGGCAGTGCTAAATTCGGCTTGAATCCCTCCCAAATATGAACCTCCGAGTCCAGTCGGATACCACCAACATCCGTGTGCGCCAACTCACTTGTTTGCTTGCATATACAGAGTACCAAAGCCACTGAGTGCTATGGCCCATGGAAACCCAGTCGCCTGGGAGCTCTGCAGCAGCTTGCTCTCCACCCAAGGGTGCAAATTGCCCAAGATGCTTGTACCGGAATGGGCGGAAATTGTGCCGTCCTGATCCTGTTCCTGTCATGCGCAACGGACCTTCTGGATGTTCTTTGCATTGGTCCATCTTGTTAAAACAT | |||||||||
gi|86869795|gb|CI316523.1|CI316523 CI316523 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): AAGACATACCAGTCGTACTTAAAATCATTCCAGATTACAGACTAGGGGCTGTTTGGTTTCCAGAGACTTATTCTAAGTCCCTGTCACATCGGATGTTTGGACACTAATTTGGAGTATTAAACATACACTAATTACATAACCCATTTCATAAGCTTGGACTAATTCGGGAGACGAATCTTTTGAGTCTAATTACGCCATGATTTTGACAATGTGATGCTACAGTAAACTTTTGATAATTATGGATTAATTAGGCTTCAAAATTCGTCTCGCGGATTAGCTCTAATTTATGAAATTAGTTTTTTTATTAGTCCATGTTTAATACTCTAAATTAGCGTCCAAACATCCGATGTGACATGGGTTAAAAAGTTTTAGGCCCATCTAAACACCCCCGTCTATAGGTCCCCTACAACAACGTTCATTAAATCCAGGAATGCATCTTTCAAATAGTAGCAAGCTACAGGCATCTAACTTCATCAGGGCTAACAGGAACAGCACGT | |||||||||
gi|88272367|gb|CI386222.1|CI386222 CI386222 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GTCAAAATAAGACATACCAGTCGTACTTACAATCATTCCAGATTACAGACTAGGGGCTGTTTGGTTTCCAGAGACTTATTCTAAGTCCCTGTCACATCGGATGTTTGGACCCTAATTTGGAGTATTAAACATACACTAATTACATAACCCATTTCATAAGCTTGGACTAATTCGCGAGACGAATCTTTTGAGTCTAATTACGCCATGATTTTGACAACTGTGATGCTACAGTAAACTTTTGATAATTATGGATTAATTAGGCTTAAAAAATTCGTCTGGCGGATTAGCCTCTCATTTATGAAATTAGTTTTTTTATTAGCTCCATGTTTAATACTCTAAATTAGCGTCCAAACATCCGATGTGACATGGGTTAAAAAGTTTTAGCCCCATCTAAACACCCCCGTTTATAGGTACCCGATACCAGAAGGCTCATTA | |||||||||
gi|88692738|gb|CI736313.1|CI736313 CI736313 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TGGCTTTATATTGTTTGTTCAGATCCCTCTACTATTTCTTTCTGCATCCGCCANTGGGTCCGTGGGCAGTCGTGCCATGCTAGACTACAAGTTGAGGCACAGGCCCAAGTTTGGCATGGGCCAGCCAACATGCGGTGCCGTGCCTAGGTCAGGCTGCCAGCATGCCTCGGGCCGATCCAATCCATTTGGTCACTGGGCCTGTTTAGTTCCAAAAAGTTTTTCCCTAAAACCATCACATCGAATATTTGAAGATATGTATGGAGCATTAAATGTAGATGGAAAAAACTAATTGTACAGTTATGATGGAAATCGCGAGATGAATCTTTTGAGCTTAATTAGTCCATTATTAGCCATAAGTGCTACAGTAATCCAC | |||||||||
gi|88200221|gb|CI200071.1|CI200071 CI200071 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GCCAGTTTGCATGTAAATTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGTCTCACAGTTGATAGACGGAATTTATAATTTGTTTCGTTATTAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGCGACGTGTTGTCAGCTAGTACAATCAAAATCAAGTGTAGGTGTTGGCGACGTCGGCGAGGTGCCCGGCGAGCTCCACCGGAGCGGAGAACATGGCCATGTGGTCGGCGCCGGCGATCTCCCTCACCTCCTCTACGGGGCAGCCGGCGATCATCCGCCGCTGGTAGGCCTCCACGATGGCCTGGTCCTTCCCGCAGACCACGTACACCTTGCGCACCGCGCCGTACCGGTCCTCGCCGAACGGCGGCTGGCGGCGCATGTCGTCCAC | |||||||||
gi|117250174|gb|CT843940.1|CT843940 CT843940 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTTTCACTCTCCTGATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCTGCGCCTTCCATGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGATCTTTTGTTTTCAGCCATCAAACTTGTTAATTTTTGTTGTTTCCTGATTAATTACTTAAGAATGGCGTGTGTTTTTGCACTTGGCAAGTGTTTAGCTAAGCATTGCCCCTGCTGATGTGTATTTTTGATGATTTACTGATGGTATGTCCATCGTTTGTACTGCATATTTCTGAACTTCTGAGCTAACCAAAGGTTGGAGCACTTGTGCTTGTGGAAGTGGTACTGATTTGTGCTGAAACTTGAAGTAATGTATGAATGGATGGAACTTGGCAGTTGTTTCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|88240081|gb|CI239243.1|CI239243 CI239243 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGAGAGCGTGAAGTCTACTCTTCCCGATTTGGGCTGTGTTTAGATTCAACTTTTTTCTTCAAACATCCAAAAATTCCGTCACATCAATTATTTGGACACATGCATGGAGCATTAAATGTGGACGGGAAAAACAATTGCACAGTTTGCATGTAAATTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGTCTCACAGTTGATAGACGGAATTTATAATTTGTTTTGTTATTAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGCGACGTGTTGTCAGCTAGTACAATCAAAATCAAGTGTAGGTGTTGGCGACGTCGGCGAGGTGCCCGGCGAGCTCCACCGGCGCGGAGAACATGGCCATGTGGTCGGCGCCGGCGATCTCCCTCACCTCCTCTACGGGGCAGCCGGCGATC | |||||||||
gi|117228355|gb|CT859722.1|CT859722 CT859722 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): ACTGGGATCACGCGGTGGCGGCGCTCTGAATAGTGGTCCCCCGGGCTGCAGGAATTCGGTAGGCTCCAACGGGAGTCGAGACTGTGACATAGGCTGTGTTGTATCACACGGCGGTGTAGATGAAAAAAAATCAATTGTACAGTTTGTATGTAAATTACGAGACGAATCTTTTGAGGTCCCAAGAAATGATTTGATAATGTGGTGCTACAGTAAACATTTGGTAATGACAGATTAATTAG | |||||||||
gi|29623262|gb|CB628273.1|CB628273 OSIIEb03L19.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb03L19 3', mRNA sequence ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GCATGGTCGGCGATGTCGTAGCCGCCGGATCCGGCTATCTCTATCGAGTCCAGTCGCTTTTTGGCGAGGCGCTGCCGCGACCGCCGCCGGATCGGGGTCGTCCATCGCCGTCGCGAGCGCCGTGTGGCTCTCACGTCGTTGGGGGCTGCCGAAGCCGAGCGGGGAAGCACGTGCGCGATCTCCGGTTAGTTGAAGAGGACGGGGGTGGCGCGGCCCTTGATGGCACGGCGGTGGCAAACGTGCAGAGCCAGATGCGCGAGTTCTTGCGCAGCTCTCAGATCTCCGACACCCACTTGCCCCAACTCCACATGCTGCTGCTAGATCCAACGGGCGGCGAGCTTCGTCGGTGGAGAGCTTTTGCGCCGACTGCTCGAGCATCCAGCAAAATGTAAGGTGGAGGTGGTGCGGTGGTTGGGTCACGGATCGGCCAGGGTGGCGAGCCTGGGGGAATTGGCAGGCAGGCAAAGGAGGGAAAGACGGGCCAAACATTAAAAAAAAATAAAGGTTGCCAGTGGAAGAAAACAAACTGTAGAAGGCAAATCCGGTGACTTGGAGCTGCTAAGGGGCTGTTTGGTTTCCAGGGACTTATTCCAAGTCCATGTCACATCGGATATTTGGACACTAATTTGGAGTATTAAACATACATTAATTACAAAACCTATTCCATAAGCTTGGACTAATTCGCGAGACGAATCTTTTGAGTCTAATTATGTCATGATTTTGACAATGTGATGCTACAGTAAACTTTTGATAAAAAAG | |||||||||
gi|86545515|gb|CI185721.1|CI185721 CI185721 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGTCTCACAGTTGATAGACGGAATTTATAATTTGTTTTGTTATTAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGCGACGTGTTGTCAGCTAGTACAATCAAAATCAAGTGTAGGTGTTGGCGACGTCGGCGAGGTGCCCGGCGAGCTCCACCGGCGCGGAGAACATGGCCATGTGGTCGGCGCCGGCGATCTCCCTCACCTCCTCTACGGGGCAGCCGGCGATCATCCGCCGCTGGTAGGCCTCCACGATGGCCTGGTCCTTCCCGCAGACCACGTACACCTTGCTCACCGCGCC | |||||||||
gi|88724537|gb|CI747796.1|CI747796 CI747796 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GTGGCTTTATATTGTTTGTTCAGATCCCTCTACTATTTCTTTCTGCATCCGCCANTGGGTCCGTGGGCAGTCGTGCCATGCTAGACTACAAGTTGAGGCACAGGCCCAAGTTTGGCATGGGCCAGCCAACATGCGGTGCCGTGCCTAGGTCAGGCTGCCAGCATGCCTCGGGCCGATCCAATCCATTTGGTCACTGGGCCTGTTTAGTTCCAAAAAGTTTTTCCCTAAAACATCACATCGAATATTTGAAGATATGTATGGAGCATTAAATGTAGATGGAAAAAACTAATTGTACAGTTATGATGGAAATCGCGAGATGAATCTTTTGAGCTTAATTAGTCCATTATTAGC | |||||||||
gi|88246675|gb|CI246524.1|CI246524 CI246524 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): AATTGACTACATGCATGCATGCCTTATATTATGAAACATCTAAAAAAATGGTTGTGCCTTATATTATGGAATGGAGGGAGTATTTGATATTAGGTCCTTCCCTAATATTCACGTTTTTTTATAATGAGCCGAGAGAGTTTGAACCTGGCAACAAAGGGCCTGTTTAGTTCGCGAAAAAAAAAAAATTTTGGATGTCACATCGGATGTTTGACCGGATATTGGAAAGAATTTTTGGACACGAATAAAAAAACTAATTTCATAACTCGTCTGGAAACCGCGAGACGAATCTTTTGAGCCTAATTAATCCGTCATTAGCACATGTGGGTTACTGTAGCACTTATGGCTAATCATGGACTAATTAGGCTTAAAAGATTCGTCTCGTGATTTCCTGCCTAATTGTGCAATTAGTTTTTTTATTTACCTATATTTAATACTTCATGCATATTTTCAAAGATTCGATGTGATGTTTTTGGAAAAAAAATTTGGGGAACTAAACGGGGCCCAAATTATGCAGGAGCATGTTTAATCATCCCA | |||||||||
gi|88249124|gb|CI248973.1|CI248973 CI248973 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTGCATGTAATTGCGAGACGAATCTTTTGAGTCTAATTACGTCTTGATTTGACAATGTGGTGCTCAAGTAAACATTTGCTAATGACGAATTAATTAGGCTTAATAGATTCGTCTCGCAGTTTATAAGCGAAATCTGTAATCTGTTTTGTTATTAGTCTACATTTAATACTTCAAATGTGTCCGTATACTTCAAAAATTTTTTTTTGGCACACGAACTAAACACAGCCAAAGACAACAAAATTATTCAGCAATGTTATCTCTACAAGAAATGATGCAGCATTTGGCAGTGCTAAATTCGGCTTGAATCCCTCCCAAATATGAACCTCCGAGTCCAGTCGGATACCACCAGCATCCGTGTGCGCCAACTCACTTGTTTGCTTGCATATACAGAGTACCAGAGCCACTGAGTGCTATGGCCCATGGAAACCCAGTCGCCTGGGAGCTCTGCAGCAGCTTGCTCTCCACCCAAGGGTGCAAATTGCCCAAGATGCTTGTACCGGAATGGGCGGAAA | |||||||||
gi|89186165|gb|CI048034.1|CI048034 CI048034 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTTTTTTGCCCAAAGAAAGTTCACCACATTATTATTCAACAGTAGTATGTTACAAAGGCATGGTTTATATTCAAACTTTTTTCTTCAAACTTTCAACTTTTCCGTCACATCAAATGTTTGAATACATATATGGAGCATTAAATATGGACGAAAAAAACCAATTGCACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGTCTAATTACGTCTTGATTTGACAATGTGGTGCTCAAGTAAACATTTGCTAATGACGAATTAATTAGGCTTAATAGATTCGTCTCGCAGTTTATAAGCGAAATCTGTAATCTGTTTTGTTATTAGTCTACATTTAATACTTCAAATGTGTCCGTATACTTCAAAAATTTTTTTTGGCACACGAACTAAACACAGCCAAAGACAACAAAATTATTCAGCAATGTTATCTCTACAAGAAATGATGCAGCATTTGGCAGTGCTAAATTCGGCTTGAATCCCTCCCAAATATGAACCTCCGAGTCCAGTCGGATACCACCAGCATCCGTGTGCGCCAACTCACTTGTTTGCTTGCATATACAGAGTACCAGAGCCACTGAG | |||||||||
gi|88839178|gb|CI378102.1|CI378102 CI378102 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): CACATCAAATATTTGGACACATGCACAGAGCATTAAATGTGGACGAAAAAAAAAACAATTGCACAGTTTACATGTAAATTGCGAGACGAATCTTTTGAGCCTAATTATGCCATGATTTGACAATGTGGTGCTACAGTAAACATTTACTAATGACGGATTAATTAGACTTAATAGATTCGTCTCGCATTTTATAGGCGGATGATTATGTAATTTGTTTTATTATTAGACTACGTTTAATATTTCAAATGTGTGTCCGTATAAAAAAAATTGGGCGTGAAACTAAACACGGCCAATTTTCATAAATCAACAAGCTCAAGTTGCATCATCTGACACGCTTCTTTGTCCTGGCCAATTTAAGAGCTAATTTCCAGTTCATTAAGTGCTTCGCCTGTGAGTGTAATATTCCTCAGATACCTGCAAATCTCACTGGTGCATAAGGTGACCATGCAAACGGAGTTCTGCGGGTGGACATCAAGCTTGGTTAATCCTTGCAGCGTCCTCTTTCTCAAATTAATA | |||||||||
gi|117252265|gb|CT844368.1|CT844368 CT844368 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GACGTGAATCCAACATTCCAACTCGAAAGTATACCTACCACCTGGCAAACTTGAGCAGACCCGGCTGCCGTTTTATGCGCTCCGGCCGAACAAAGGTGCGCTATTCTATCTGCTGGTAATGTTTCCGCTCTGGCTTCGTGCCTTCAGATGCTTGCCGTTTTTACCGTTGAGGGTGAATTGTGCGCATGTGACAAAAGTTATTCAAACCGTTATGCTTTAAATGACGGTAGTTATTTCTTTCATTTGATCAAGCGTTCCGTTATGAGGGATTTAAGGCCTTCTCAAAAACATCACATTGAATCTTTGGACACATGTATGAAACATTAAATATAGATAAAAAGAAAAACTAATTGTACAGTTTGCATGTAAATCGTGACACGAATCTTTTGAGCCTAATTGTGCTAACGACGAATTAATTAGGCTAGTTATGAAATTAGTTTTTTCATTCGTATCTAAAAACCCCTTTCGACATCCAGTCAAACGTCCGATGTGACACCCAAAATTTTTTATTTCGCTAGCTAAACAAGGCCTAAGTTTACCACCATATTTTTTTTAAAAACTCAAGTTTACCGAAGTTAGAGAGTGCATTTGGCCTGTCTACCTACCCCACCCCCCCAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|88504702|gb|CI432208.1|CI432208 CI432208 Oryza sativa (japonica cultivar-group) callus suspension-cultured cells treated with ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): CATCTCTGAACACGTGTATAGAGCATTAAATATAGATAAAGAACTAATTGTACAGTTTGCATGAAAATCGCAAGACGAATCTTTTGAGTCTAATTAGTCCATGATTAACCATAAGTGCTATAGTAACCCACATATGCTAATGANGGATTAATTAAGCTTAATAAATCCGTNTCACGGTTTCCAGTCAAGTTTATAAAATTAGTTTTTTCATTCGTGTCAAAAACCCCTTTGGACATCNGGTCGGACAGCCCAAACGTCCGATATGACACCAAAAATTCCATTTCGCGACCTAAANAANCCTTACTAGAGTCACTCCACATCTCAAAGCATGTGACTGGATAAACCGCGAGCACAGTATTTGACATATAATCAACGGCGTACATTAATGAGTAGTAAAA | |||||||||
gi|88464219|gb|CI532154.1|CI532154 CI532154 Oryza sativa (japonica cultivar-group) 1 day after pollination pistil Oryza sativa J ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): AGGTTAAATTTGTACTTCCATAGGAAAACCTCCACGTTTAGTTCCCAAAAAGTTTTTCTCAAAAACATCACATCGAATCTTTAAACACATGCATGGAACATTAAATGTAGATTAAAAGAAAAACTAATTGCACAGTTAGAGAGGAAATCGCGAGACGAATCTTTTGTGTCTAATTAGTCCATGATTAGCCATAAGTGCTACAGTAATCCACATGTGCTAATGGCGGATTAATTAGACTCAAAAAATTCGTCTCGCGGTTTCCAGGCGAGTTATAAAATTAGTTTCTTCATTCGTGTCCGAAAACCCCTTCCGACATCCGGTCAAACATCCGATGTAATACCCAAAANTTTTCTTTTCGCGAACTAAACAGGG | |||||||||
gi|88200789|gb|CI200639.1|CI200639 CI200639 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTATTTTTTTTTTTTTTTTTTTTTTTGGGACGGAAAAAACAATTGCACAGTTGGCATGTAAATTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGCCTCACAGTTGATAGACGGAATTTATAATTTGTTTGGTTATTAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGCGACGTGTTGTCAGCTAGTACAATCAAAATCAAGTGTAGGTGTTGGCGACGTCGGAGAGGTGCCCGGCGAGCTCCACCGGCGCGGAGAACATGGCCATGTGGTCGGCGCCGGCGATCTCCCTCACCTCCTCTACGGGGCAGCCGGCGATCATCCGCCGCTGGTAGGCCTCC | |||||||||
gi|89175280|gb|CI111799.1|CI111799 CI111799 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): AAAGGTGCCAAAATAAGACATACCAGTCGTACTTAAAATCATTCCAGATTACAGACTAGGGGCTGTTTGGTTTCCAGAGACTTATTCTAAGTCCCTGTCACATCGGATGTTTGGACACTAATTTGGAGTATTAAACATACACTAATTACATAACCCATTTCATAAGCTTGGACTAATTCGCGAGACGAATCTTTTGAGTCTAATTACGCCATGATTTTGACAATGTGATGCTACAGTAAACTTTTGATAATTATGGATTAATTAGGCTTAAAAAATTCGTCTCGCGGATTAGCTCTCATTTATGAAATTAGTTTTTTTATTAGTCCATGTTTAATACTCTAAATTAGCGTCCAAACATCCGATGTGACATGGGTTAAAAAGTTTTAGCCCCATCTAAACACCCCCGTCTATAGGTACCCCATACAACAACGTTCATTAAATCCAGGAATGCATCTTTCAAATAGTACAAAGCTCCAGCAATCTAACATTCATCAGGGCTAACAGGAACAGCACGTTTTCCAGCTT | |||||||||
gi|29680160|gb|CB676435.1|CB676435 OSJNEe12L04.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe12L04 5', mRNA sequence ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): CTGCATTGTTGTGGATCGAGTAGCTATAGCTAGCTAGTGATGGAGATCTTGGTGAGTGCACTGCTCCTGCTCCTCGTGCCACCCTTGTCCGCCCTCCTCGCCGTCGCCGCGCCGAGCCTCGCGTGGCCGTCGGGGTCGTCGTCGGTGAGGAAGCTGATCGCCAAGAAGGTGGCGCCGGAGCAGGCGGCGCGCGACGAGCTGCTGCGCGTGGCGCGGTACAGTAGCGCTAGCGTCGCCGCTGCCGCTAGTGCTGTCCAACAACCAGGCGGCAGCGAGAGTAGTCGTCCGGCGGCGGCGGCGGCGGATGATGGTGGGCGGCCGGATCAGTGCGCGGTGTGCCTGAGCGGCATCGAGGAGGGCGACGAGGTGAGGGAGCTCCGGTGCCGGCACCTGTTCCACCGTGGCTGCCTCGACCGGTGGTGGTTGTCGGCGCGGCCGCCCGCCACGTGCCCGCTCTGCCGCTGCCGGCTCCTGCAGAGCCCGTCGGCGGCGGCGGACGACGGCGACGGCGACGGCGAGGAGGATTCGGACTCGGACATGGTGATGTTCATGGCGTACCTGCGAAGCAGTAGCACCTGGCTCTAGCCATTAAGGGCGTGTTTAGTTCCAAAAACTTTTCTCAAAAACATCGCATCAAATCTTTAGACACATATATAGGACATTAAATATAGATAAATAAAAAACTAATGGCATAGTTTGCATATAAATCGCGAGACGAATCTTTTGAGTCTAATTAGGCCATGATTAACTATAAGTGCTACAATAACTTACATGTGCTAATGACAGATTGATTAGGCTTAAAAGATTCGTCTCGTGGTTTTAGTTTTTTTATTCGTGACCGAAAATCCCTTTTG | |||||||||
gi|86546131|gb|CI186337.1|CI186337 CI186337 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GCACAGGTTTGCATGTAAATTGTGAGACGAATCTTTTGAGCCTAATTACGCTATGATTTGACAATATGGTGATACAGTAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGTCTCACAGTTGATAGACGGAATTTATAATTTGTTTTGTTATTAGTCTATGTTTAATACTTAAAATGTGTGTCCGTATACGTCAAAAAAAAATTGGGTATCTAACTAAACACGGCCTTGGTATGTTATGCTGGCGACGTGTTGTCAGCTAGTACAATCAAAATCAAGTGTAGGTGTTGGCGACGTCGGCGAGGTGCCCGGCGAGCTCCACCGGCGCGGAGAACATGGCCATGTGGTCGGCGCCGGCGATCTCCCTCACCTCCTCTACGGGGCAGCCGGCGATCATCCGCCGCTGGTAGGCCTCCACGATGGCCTGGTCCTTCCCGCAGACCACGTACACCTTGCGCACCGCGCCGTACCGGTCCTCGCCGAACGGCGGCTGGCGGCGCATGT | |||||||||
gi|88513664|gb|CI441170.1|CI441170 CI441170 Oryza sativa (japonica cultivar-group) 4th leaf leaf 3mM SA(salicylic acid) for 1 da ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GCTAAGGGCCTGTTTGGGAAACATGGATTTATTCCCCAAGTCCCTATCACATCGGATGTTTGGACACTAATTTAGAGTATTAAACATACACTAATTACAAAACCCATTCCATAACCTTGGACTAATTCGCGAGACGAATCTTTTGAGTCTAATTACGCCATGATTTGACAATGTGATGCTACAGTAAACTTTTCATAATTATAGATTAATTAGGCTTAAAAAATTCGTCTCGCAGATTAGCTCGCATTTATGAAATTAGTTTTTTTATTAGTCTATATTTAATACTTCAAATTAGCGTCCAAACATCCAATGTGACATGTACTTTAAAAAATAAACACCCCCTAAAATAGTGCCTCCCTTTACATTAGCTGACTTAGTAGAGTATGAACAGAGTTGTTTAAATGGACAC | |||||||||
gi|88451913|gb|CI694691.1|CI694691 CI694691 Oryza sativa (japonica cultivar-group) 3rd week immature panicle Oryza sativa Japoni ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTTCACTCTCCTGATCCCCTTTCTCATCCTAGATCCAATCGGCCAGGGGGCGGCGACGGCGAGGCAGCCAGCCGCCGGCTGCGCCTTCCACGGTCCTCCGCGCGACATCCACGAGCCTCCAAGCTGCGCCGCCACATGCATGCCGAGCTTCCGCGAGACCTCGACACGCCGCTGTTGTTGTCTCCAAGCAGATCTTGCGCTCCCATCCTCTTCTGGTCGACTACTCCACGCGGCGGCCCGCTGCTACAGCTATTGCACGTTGTGCCATGGCTGATTAGTTGCCACTAATCTTTCTGGTTTTTCATGCTTGATTGCTTCTTGTTGGACTATTTTGTGCTTGATTGCTTTTGCATGTGTAAGTGTGAGACAGATCTTTTGTTTTCAGCCATCAAACTTGT | |||||||||
gi|88438086|gb|CI536245.1|CI536245 CI536245 Oryza sativa (japonica cultivar-group) 4 nuclei stage anther Oryza sativa Japonica G ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GCCAAAAACGTCACATCGAATGTTTGGACACATGCATAGAACATTAAATGTGGACGGAAAAAAAACCAATTGCACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCCTAATTACGCCATGATTTGACAATGTGATGCTACAGTAAACATTTGCTAATGACGGATTAATTAGGCTTAATAGATTCGTCTCGCAGTTTACAGGCGGAATATGTAATTTGTTTTGTTATTAGTCTACGTTTAATACTTCAAATGTGTGCCCGTATACGTCAAAAAAAATTTGGACAGTGAACTAAACACAGCCAAAGTTTTTTGCCGGGTAAACACAGCCAAAGTTTTAAAGTGGAAACGTAGATTGTCTATTAGTCTATGACCAGCTACTATAATTAAAG | |||||||||
gi|88996837|gb|CI389503.1|CI389503 CI389503 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): TTGACTAAATGTGAATAAATTTTAACCAAATTCTTACATAAAAATATGAACAACCAAAAATTCCGTACAAGATATTTGCTTGCCGGTGTGAGTTCGGAGGGATTTCCGAAATTACTGAAATTACTTTCAGATATTTCGAACTGAAATTTTAAACCTGGTAGCAAAAAACTAAGGGGGTGTTTGGGAATTAGGGACAAAAATTTAGTCCCTGTCACACCGGATGTTTGGACGCAAATTTAGAGTATTAAACATAGATTAATTATAAAATACATTTCATAACCTTGGACTAATTCGCGAGACAAATCTTTTGAGCCTAATTAATACATGATTAGCCTATGTGATGCTACAGTAAAGATTTGCTAATTATGGATTAATTAGGCTTAAAAAATTCGCCTCCTGGATTAGTTCTCATTTATGAAATTAGT | |||||||||
gi|86904593|gb|CI321501.1|CI321501 CI321501 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): GGCCAAAAACGTCACATCAAAATATTTGGACATATGCATGGGGCATTAAATGTGGGAAAAAAAACCAATTGCACAGTTTGCATGTAAATTGGGAGACGAATCTTTTGAGCCTAATTACGTCATGATTTAACAATGTGATGCTACAGTAAACATTTGCTAATGATGGATTAATTAGGCTTAATAAATCTGTCTCACAGTTTACAAGCGGAATCTATAATTTGTTTTGTTATTAGTCTACGTTTGCTATTCGTCTGGCTTGTTTTCATACGGCGTTCATTGTACCTTTGAATGTCGAGAGTGGGACAGTTGGGGTGGGAAACCGGTGCAGCCTGGCGTCATCCTCCGAAGATCCACCT | |||||||||
gi|29630432|gb|CB635441.1|CB635441 OSIIEb15N08.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb15N08 5', mRNA sequence ACACAAAAGATTCGTCTCGCG EST sequence (targeted fragment marked with yellow): ACAAAGGCATGGTTTATATTTAAACTTTTTTCTTCAAACTTTCAACTTTTCCGTCACATCAAATGTTTGAATACATATATGGAGCATTAAATATGGACGAAAAAAACCAATTACACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCCTAATTACGTCTTGATTTGACAATGGGGTGCTACAGTAAACATTTGCTAATGACGAATTAATTAGGCTTAATAAATTCGTCTCGCAGTTTACAGGCGAAATCTGTAATCTGTTTTGTTATTAGTCTACGTTTAATACTTCAAATGTGTCCGTATACTTCAAAAATTTTATTTTGGCACACGAACTAAACACAGCCAAACTCAACAAAATTATTCAGCAATGTTATCTCTACAAAAAATGATGCAGCATTTGGCAGTGCTAAATTCCGCTTGAATCCCTCCCAAATATGAACCTCCGAGTCCAGTCGGATACCACCAACATCCGTGTGCGCCAACTCACTTGTTTGCTTGCATATACAGAGTACCAAAGCCACTGAGTGCTATGGCCCATGGAAACCCAGTCCCCTGGGAGCTCTGCAACAGCTTGCTCTCCACCCAAGGGTGCAAATTGCCCAAAATGCTTGTACCGGAATGGGCGGAAATTGTGCCGACCTGATCCTGTTCCTGTCATGCGCAACGGACCTTCTGGATGTTCTTTGCATTGGTCCATCTTGTTAAAACATTCAACAAGATAGTGTCCTTGTTGTGC | |||||||||