| mature miRNA: ACACTATGGGACGGAGGGAAT species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207440061|gb|FF344044.1|FF344044 BG02010A1C05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACACTATGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GCAGCTTCTGAACTGGATTTTGATGACATGCAAGCAACTTTATTTCAAGCATCAGGTTGACTTGGGGCCTGACACCGGTGAGGTCGGAGACGACGGTTCATGGCAGAGGCCGTCGACAACGTCCAGGACGCCATGTTGCCAGTCTACCATCTGCTCCAGCCCGCTTCATTATTTGCTTGCAAACTTTATTCGTAGTGGCGGCTGCCACTGGTAGTGTCTCGCGTCCCGTCCTGCAATAGACGGCAAGATCCCCATGGTGGTGGAGGTGCAGAACCACGGTCCGATGGACGGCAAGCACTCTGTGCTGATGTTCCTCCGGTGGCCCAATGTGACGGACGGCCGGCCAGCGAGGCAGCTGATTGCGTTCCGTAGCCAGCATCTCAAAGCAGGGGAGAAGGCTGAACTCAAGTTTGACATCAGCCCATGTGAAGACTTGAGCAGGGTGACAGGGAATGGCCACAAGGTGATCGACAGAGGGTCTCGTTTCCTCATGGTTGAGGGGGGCGAGTTGGAGATTCCCTCCGTCCCATAGTGTCAAAAAAACGTCTTGCATTAAGGGACGGAGGGAGTAGTTTTTAGCAAGCTCGGTGTTGGTGTTTCTCTGTGTTAACCCAGTTTAGCTAGGCGCTCATGTTGTTTTAGTTTTTGTTCTTTTTTCTTCGGGTGTGTCTTACTAACGGTCAACTGATTTTCATTTCATCATAAGTCAAATTTTGTGCCCAATCAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|207404024|gb|FF359537.1|FF359537 BG02035B1D05.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACACTATGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GCATTTTTTNNTTTTTTTTTTGCAGTTCAACCTCTGTTTATTCATCATTACCAAGTACTCCATCCGTCCCATAATGTAAGACGTTTTTTGACACTAGTACGGAGGTAGTACAATACAAACAGAATGTAAAGTACAGTATCTGAGTACCGAGTGGTCCTCTACCACACCGAGTTGACGCCACAGCTTCAGCCTTGACATGTCACACAAAACACACAAACTGTTCACGCTACAATGTCCAGCAAACAATAAAGCTCTATAACCTGACCTTACCTGACCTGACCATAATGGTAAAGTGGGGGTCACAAATCTGATTGCTTCACCGTTGGCTAACCAGGTTTTGCTCCTTGTGCCAACGGACAACAGTATCATAGGGCAAATCTCCGCCGAATATGTCTAGGGCACTCCCAACAGTGACATCGACTCGACTTTTGCCTGCTTTCTTGATCCTCTCCAGGTCGTCCATCGTTGACACACCCCCAGCGTATGTTGTCGGGATAGGTGAATGATTTCCCAGTAGTTGCACGAGTTCCTCATCAATTCCTAACCTTTTGCCCTCCACATCAACTCCATGAACCAAAAACTCATCTGCATATTCAGCAAGACGTACTAATGTTGGCCCATTCACAAAGACATCGCTGAACTTCTGCCATCTGTCAGTCACAATGGCATATCTGCCATCCTTTTTTCGACAACTAAGGTCCAAAATAAGCCTTCGTTTCCCAACAAGCTTGACAAGTTGCG | |||||||||
gi|207521167|gb|FF351174.1|FF351174 BG02017B1G01.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACACTATGGGACGGAGGGAAT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGCAGTTCAACCTCTGTTTATTCATCATTACAAAGTACTCCATCCGTCCCATAATGTAAGACGTTTTTTGACACTAGTACGGAGGTAGTACAATACAAACAGAATGTAAAGTACAGTATCTGAGTACCGAGTGGTCCTCTACCACACCGAGTTGACGCCACAGCTTCAGCCTTGACATGTCACACAAAACACACAAACTGTTCACGCTACAATGTCCAGCAAACAATAAAGCTCTATAACCTGACCTTACCTGACCTGACCATAATGGTAAAGTGGGGGTCACAAATCTGATTGCTTCACCGTTGGCTAACCAGGTTTTGCTCCTTGTGCCAACGGACAACAGTATCATAGGGCAAATCTCCGCCGAATATGTCTAGGGCACTCCCAACAGTGACATCGACTCGACTTTTGCCTGCTTTCTTGATCCTCTCCAGGTCGTCCATCGTTGACACACCCCCAGCGTATGTTGTCGGGATAGGTGAATGATTTCCCAGTAGTTGCACGAGTTCCTCATCAATTCCTAACCTTTTGCCCTCCACATCAACTCCATGAACCAAAAACTCATCTGCATATTCAGCAAGACGTACTAATGTTGGCCCATTCACAAAGACATCGCTGAACTTCTGCCATCTGTCAGTCACAATGGCATATCTGCCATCCTTTTTTCGACAACTAAGGTCCAAAATAAGCCTTCGTTTCCCAACAAGCTTGACAAGTTGCGTCAGCCTTTCAATGTTCATTTTGCCATCACTAAACACATAAGAAGTTACAATCACGTGACTTG | |||||||||