| mature miRNA: ACATTAGCCAATCACAATGCC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9668333|gb|AL368580.1|AL368580 MtBA25D04R1 MtBA Medicago truncatula cDNA clone MtBA25D04 T7, mRNA sequence ACATTAGCCAATCACAATGCC EST sequence (targeted fragment marked with yellow): ACTTTTCCGTTTTTCGGTGGTCTACTAGGATTTTTTGGTGGATTTGCTTTTGCTCCAACAACATACTTTCTACCATGCATAATGTGGCTTGCAATCTACAAACCAAGGAGATTCAGCTTGTCTTGGTGGTGTAACTATGTTTGCATTGTGCTTGGCTTATGTTTGATGCTTTTATCACCTATTGGAGGATTGAGGTCAATCATCCTTAATGCCAAGAGTTATGATTTCTATTCTTAAACTAATAACAATGATGGCAACATTATGTACGCAAATGCACGAAAGAAGTCGAATTGTATGAAAGAATTTGGTTATTATCTAATGTGAATTAGTAATATTTGTCTATGGAATATCCATAACATGCTTATTGGTGGAGAAAAAGTAGCTGCAACAAAGTAAAGGGAATTTTCGTCTTTTTTATTTCAACTCTCAATGTATATTTCTTTCCCTTGTTTTAGTGAACTTGTTGTTATAATTACCTATTATGTTTTTGCGATATATACATTTTATTTTATATT | |||||||||
gi|157979732|gb|EX528004.1|EX528004 MTGland_A035_2007-06-15/MTGlandA035_H12_041_1 Medicago truncatula A17 glandular trichome Med ACATTAGCCAATCACAATGCC EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGTACCTAATATAGTAATAGCTAAAAACAATGACACTGCAAACATGTAATAAATTCATGGATAATATTTAGGTGACATTAGTGACATTGACCAACCACAATGTAATAGTTGTACAAAAAACAAAAAAATTCTTGTGAAAGAGAAAGAAGAAAAACCACTTGTGATATTGTGGTTGGCCAATGTCACCAACTACAATGTCACTCAAGTGCTACCACCTAAATTCACATATGTCACATTTGCTCTATATCGTTAACGAGAGTGGCCCAACACTAAAATTGATGGAGNCAAAAAAAAACTACTAAGAGCATCCACAATAGAAGTTTTTTTTTTTTGAAATGACAAATTTATTCTCGTCGAGTAAATGCAAGACACATAAAAAACTCGCGGAAAAGAAAAAAAATACAAGCGACGCTGCATATATACAGAACACCACCACAACACAAAACCCTTACACCTCCCAAAAACAATGAGGCCAAAGTATACGTAAAGAATGAACCAAAACGAATACACACACCTCACTATCCCCAAGCGAAACTAGGGCCAGGAGCCGGAACAGAAAAAACAGCGCTGCAGCTGCACCACCAAACAAAGTGCATACTAAAAAACAAAACCNGCAGGGACCAAAAACAAAACCACAATAGGAGGGCCTGAAACATTTAAGACCCGATACCTATTAGGTACTTCATTGGAGAATTCTTTTGAAGGNCCTATAGGANCCAATGTCTCAAGCAAGCGTCTCATTCTTAAGTGGGANCCACAATATTTTCATTAAATTAATTATTCTTACNCACGCTTTTTTAATAATAATTGGGANCNATATTTTTTTAATATTCNAAAATTAAAACNTAATGATATAAAATTATCGATAGTTGANTAGTGGGTCTCATTTAANAAATTTGAATGANANGCTGGGTNGGNNGGNTCTAGNGTTTATTNNNNATCGCTATTAAAAATTATAAANTNANGATGTGTAGACNNNACTC | |||||||||
gi|209568967|gb|GE350913.1|GE350913 MEUAU92TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence ACATTAGCCAATCACAATGCC EST sequence (targeted fragment marked with yellow): ATAGTTGTAGCTTTGTGCTACTTTCCAGTTGCTCTCATTGGTTATTGGATGTTTGGAAATAGTGTTGATGACAACATTCTCATGACTTTAGAGAAACCAAACTGGCTTATTGCAATGGCAAACATGTTTGTTGTTATCCATGTTATTGGAAGCTACCAGATCTATGCAATGCCAGTATTTGACATGATTGAAACAGTGATGGTAAAGAAGTTGAATTTCAAGCCTACCACAATGTTGCGTTTTATTGTACGAAATGTGTATGTGGCGTTCACAATGTTCATTGGTATTACTTTTCCGTTTTTCGGTGGTCTACTAGGATTTTTTGGTGGATTTGCTTTTGCTCCAACAACATACTTTCTACCATGCATAATGTGGCTTGCAATCTACAAACCAAGGAGATTCAGCTTGTCTTGGTGGTGTAACTATGTTTGCATTGTGCTTGGCTTATGTTTGATGCTTTTATCGCCTATTGGAGGATTGAGGTCAATCATCCTTAATGCCAAGAGTTATGATTTCTATTCTTAAACTAATAACAATGATGGCAACATTATGTACGCAAATGCACGAAAGAAGTCGAATTGTATGAAAGAATTTGGTTATTATCTAATGTGAATTAGTAATATTTGTCTATGGAATATCCATAACATGCTTATTGGTGGAGAAAAAGTAGCTGCAACAAAGTAAAGGGAATTTTCGTCTTTTTTATTTCAACTCGCAAAAAAAAAAAAAAAAAA | |||||||||