| mature miRNA: ACATTCTTATATTATGGGACGGAG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21165024|gb|BJ486588.1|BJ486588 BJ486588 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): GAGAAGACAACCCCGAGGTCGAGCGCCAGGGATCAAGCAATACAAGTCTTTTAGGGAGCCTGAAATCGTTTGCTTCTGGGATCAGAAACTTCTGGAGAAATCTGTAAATTTGTCTCATTTTGGCTTGAAGCTAACACACATGAAGTCCCCTTATCTATCATTTCGTGAGCCTGGAGCTGCTTGTGAAGCTTTGTGAAGGCTACAGAGTTAATGATCCAAGTGCCCCCTGTTTAGCATTTTTGTGAGCCTGAAGAAAGCTGTAAAGTTATATTTTTGCACTACTGAACATTGGTCTGATTCCTGCAGTGTCATGGGACTTATAAGCTACTCCCTCCTTCCCATATATAAGAGTGTTTTTAATACTACACTAGTGTGAAAAACATTCTTATATTATGGGACGGAGGAGTTAGATAGGAGCATATTTGGGTGCATCTAATGTTTACAGGCGGTCTATCATAATGCACTGCTG | |||||||||
gi|13086155|gb|BF626269.2|BF626269 HVSMEa0018D07f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vu ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): CAGCCCGGTCTGCCAGTCCATGATCATACCGCAGCTCATCTGCCACGTACTTCGCCAGCACCGGCCCGTCCCTTCTATCCGAGGACCCCTACGAACGCGCCACGGCTCGCTTCTGGGTGGCCTACGTTGACGACAAGCTGGTAGCCCCATGGACGCAGACCTTGAGGGGCAAGACAGAGGACGAGAAATCCGAGGGAAAGAAGCAGACGTTCGCCGCGGTGGAGGTCCTCGAAGGGGCCCTCAGGGAGTGCTCCAAGGGAGGGGACTTCTTCGGCGGGGACGGCGTCGGGCTCGTCGACGTTGCGCTGGGAGGTCTGCTCTCGTGGATGAAGGTGACCGATGTGCTTTCCGGTGACAAGATCTTCGACGCCGTCAAGACTCCGCTCCTGGCCGCGTGGGTGGAGCGCTTCAGCGCGATCGACGCGGCAAAGGCGGCCTTGCCGGATGTGGGCAGGCTGGTTGAGTTCGCCAAGGCACGAGAGGCTGCCGCTGCAGCGTCTAAGTGAGCCAGCAGATATCCAGAATAATTAAAATTTGTTATTTTTAAATGTTGTTTGTTTGGCTGCTGGATGTAATAATAATGTTAGAGTAACGTTTTACTGATGTACGCCCTCCGTTCCTAAATATAAGTATGTTAAACGATTTCACTAAGGGGTTAGATACGAAGCAAAATGATTGAATGTACACTCTAAAATATGTCTATATTCATTCCGGAGTACTCTATTAGGGAAACCTTTAAAAGACTTATCCTTCAACA | |||||||||
gi|161481334|gb|EX590593.1|EX590593 HDP12E11w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12E11, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): CGAGGAGATGGTCGACGCCGGGTGCTACCCGGACGCCGGGACCGCCAAGGTGCTCGTCGCCGCCTGCTCCGACGAGCGGCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGGAGGCCAAGACATTGTTCACCATATGACAAAGATGAAGGAAAATCTTGTGCTAATTAGCTAGTGTAGACCAGATAAGATTACTCCTTCATGGATTGTTTATCTATTATTTCCCGGTCCCATGATATAAGAGTGTTTTCGTTCCATGATATAAGAGTGTTTCTAATACTCTCGTATCACGGGAAAACACCCTTATGTCAACACTTTTATATCATTGGGACGGAGGGAGTACATTACAAAATTTTGCTGTTTCACAAAATCGATTGAAAAGTCAATTAT | |||||||||
gi|14525030|gb|AV832941.1|AV832941 AV832941 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare top three leaves ad ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): AATGAAGAGATGGTTTGAACAGTTCGCAAAAAGGGATCTTCAGACACTAAACAAGGTTTCTGAGTCGACCAAAACAAAATCCACAAACTAAGATAACATCATTCATTAGCTACCATAAACATCTCACTTCTCCCCGTTCTCCCATCGGCAACCTTCTTCATCCGGGCTCCCAACTTGTGTCGGTTCGACATCTCCACACGAAGCTTACCTTATACATGTGCATCTCGCCGCCATGAGTGATGGACATGTAATCGCTCTGGACCCCTTGAGAAGATGTCGCTTCTACCTAGACCTTGTATCTTGACCCTGCAGTGACATGTTCTTGCGGCGGTGGTCCAAGAAAATTCGAATTGTCATAACAAGCTTCTTTGGGATGCCCACAACCACAATTTACAATATAAACGTCAACAAATAACGAAAGAAATTTGAACATATTATCTCATGTAGCATTTTAACGGATCATTATTTTGCAATAGATGTGCACATGCAATGCATGTATCAATTAATTTACAATAAACAAGTGTACATTAAAAATATACCCCCCTCGGTCCTGTAATATAAGAATTTTTTTGCAAGCTAACATAGCTTGGTAAAAACGCCTTATATTATGGGACGGAGCGAGTAATTCTTATGAATATTGCAAGCTAATCCCTTATCTAAAATGTGTTGCTCAAGGCCATGAAAACTGCAAACCGAAGGACTAAAAACATTGC | |||||||||
gi|40952284|gb|CK566710.1|CK566710 HO04G14w HO Hordeum vulgare cDNA clone HO04G14 3-PRIME, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): CTTTTTTTTTGTCTTCCAGAAAGATGATTGCATTTTAGCAATTAAGCATGGATACAGAACTTGAGTATCCAATCCTCTAACCGCTAGCTACTCCTCCCTCCGTCCTATAATATAAGAATATTGTTTATACTATACTATATCAGAAACACTCTTATATTATGAAACGGAAGGAGTATATGTTTCCGCATAGAAGTTCACATGACCTGGGAGCAAAATAGGTTAATTCATACTCGGTATAATTACAACCGCAGCTGCAACTTTTTCGTGAGCTGCGTGCATCGCCTCATACATTACATCACATATCCTCCTCCTCAGAGATTGCAGTCAGCTCGGATGATAGATGGTAAGAATCATCTACATGGGCGTGCCCCTCGTCGCAGAAGAATGGCCTAGATGGCATTTGCAGGCCATCAGCGGCACCTTCCAGCATCTCTATCGCCTCGCTCATTGTCGGACGATCATGAGACCTCATCTGGATGCACCATAAACCAACAATGCATAGCTTCCTCTCCAACTCGTGCATCTCAGCTACTGCAGAAGATATCCCACTCTCATCCAATTGTTGCTCAGTTAGCCGGCTATACACCCATGAGGGGTAGTATGCCTGACTTGAGTTAACGGCATTGGGATCAGCATTCCTGCGTCCGCCAGCCATCTCGAGCAGCAGCATCCCGAAACTGTACACATCCGACTTACTCGA | |||||||||
gi|18224204|gb|AV928407.1|AV928407 AV928407 K. Sato unpublished cDNA library, cv. Haruna Nijo second leaf stage seedling leaves ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): AGGTCAGAGCATGAAAATATGACATATGCAGGCATTGATTTGATGCCTCTCTTTGTTATGGATGTCGTATTACCCCTGCCAAAAGATGGCACTGAACATATTTGAACCTCGCTACAGGCTGATGGTAAGGAGGATAATGGAAGGGAATCGTCGGATGGGAATGGTTGCTATTGATTCTGCGACGGGAACTGTAGCTGACTGTGGTTGTGAGGTGGAAATTCTTGAGTGTGAGCCACTTCCAGATGGACGTTTTTATCTAGAGGTGGAAGGTTCACGACGGGTTTCGTATCTTGCGATCCTGGGATGAAGATGGGTACCGTGTTGCTGAAATTGAATGGTTCCAAGATTTTTCTTTACCAGAAGGATCACAAGAGAGGAGAGATCTAATCGAAAGGGCCAATGAAGCTTCAGAACTGGCTAGGACGTACATTAGGCGTGCCAGAGAAACCATAACACCTGTGAGGCGGACACGACATTTCGATCTTGAGAGCATTCCTGGACCACAGGACCCTGAGAAGTTCAGTTTTTGGCTTGTCAACTTGATTAATTTGAGGCCATCGGATAAATTAGATCTATTACGCCTCTGTGATACTCGGGAGAGAATATCTCGTAGCCTTAGATTGCTGGGTAATGCAGAACAAGGTTGCCGTGTACAGTAACGGATTATATATTTGGCGCAAAACCATTATAGAATCAATTTACTCATCACTCGGTACATTNACTAACAATGTACTCCCTCCGTTCCATAATATAAGAACGA | |||||||||
gi|217053849|gb|GH220578.1|GH220578 HVSMEi0012E14r2 Hordeum vulgare 20 DAP spike cDNA library HVSMEi (HVcDNA0010)2 Hordeum vulga ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGACACATAAAAAGTTGGTCATATAATTAATATATACCCCCTCTGTCCCATAATATAAGATTGTTCTTCAAGCTATGTGTACAACTATAAGAAAAAGAAAGAGAAATTGTGTAAGATGAAGAAAGCTAACTCTATTACTAATACTAATAAAGATCCAAAGGCATCCGTGCGAACACAACACTGAGTTATTAGGTGATTGTCCAGCAACACAACTTTTCACATAATTCAATCCATCCCCAGTGCGGCATGTTAAACACCACATGAAAAAGATGCTCTAAAGGAACAAATAGCTAAAAAGGGTGTGCCATGAAAATTGCTAGCATCTTCTGCCCTGAGCTTGTGTTGCTCGATCTGATTTCC | |||||||||
gi|161473481|gb|EX592866.1|EX592866 HDP37J20w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP37J20, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): AGCTAAAGCAGTGGGATTGCCCAAAATCAGTTTCTTGATTGTGGAAATGTCGCCTGTTACCGACATCGATACGAGTGGCATACATGCTCTTGAGGATCTATACAAGAATCTTCAGAAAAGAGATATGCAGCTCATTCTGTCAAATCCTGGTTCCGTCATCATAGAAAAACTGCAAGCATCGAAGCTCACCGAGCACATTGGAAGCAACAATATATTCCTCGCAGTCTCTGACGCCGTGCGATTCTGTACGACGAAGTCGATGCAGGAACCGTGAGTGAAATACTTCGGCAGAATGGCTGATGGCGCCGTGGTGGTAGTGTTGCAAAATAAGTACTCCCTATCCGTTTTATAATATAAGAACGTTTTAAACGTTTTTGACACTACACTAGTGTTCAAATGCTTTTATATTATGAAACCAAGGGCGTAGTGTTTGTGTTCCCTGTGATCTAAGCTGGGTAGCGCAGGATGATGTAGCTTTGTGGCAAATGTAGAAACATATAATAAGTTAAGGAGTTGCCC | |||||||||
gi|21145032|gb|BJ466526.1|BJ466526 BJ466526 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): TCTACTACTGGACCGGCCTTCTTGAAGTTGGCTCGAGAAAAGCTCAGTACTGCAGAGTATGGAGAGTTTGTTGAATTTATGAAGGCCTTAAAATTGAAAACCATGCACATCAAAGACTCACTTGAAGCAATAGCGAAACTGTTTTCTTCTCCAGGGCGACTCACACTTCTTGAAGGGTTCAGGGTCTTTGTTTCTAAGAATCATCTTCCATTATATGAGCAGCTTGTTAAAAAATATACCATGGCTAATACATAATGACATCATCTGTTGCACATATTTAAAGATGAAATGTGGAAAAACCTCGAGAAGCAAGCCCAAAGAATTCCACTGAATTCATGCAATTAACTTATGGGAAGTGTAAGTTCTTGAAGCCATCTGAGGTTTTCATCCCAATCAGTGCATTGCACATATCGTGGAGTATGTGTAGGGATCTTCAACTGTAAATTAAAAAATGTAATTATCCCATATTATGTTTCTGGAAATAGGTTTATATAACTCATTATCTGTAGTTTGGTGCTGGTACATTTGGTTTAATGAGCATTCCCATGTTTTCAGCAATGGGCTTAGCTTATGGTTGTTGTGTTGAACTTATGTTGTACTCCCTCCGTCCCACAATATAAGAACGTTTTGACGCTACACTAAAGGGAAGGCCAGTTGGCAGCAGAGTTTANAAAACCAAA | |||||||||
gi|161483909|gb|EX573803.1|EX573803 HDP26O09w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP26O09, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): GAGGGAGAGATCTAATCGAAAGGGCCAATGAAGCTTCAGAACTGGCTAGGACGTACATTAGGCGTGCCAGAGGAACCATAACACCTGTGAGGCGGACACGACATTTCGATCTTGAGAGCATTCCTGGACCACAGGACCTTGAGAAGTTCAGTTTTTGGCTTGTCAACTTGATTAATTTGAGGCCATCGGATAAATTAGATCTATTACGCCTCTGTGATACTCGGGAGAGAATATCTCGTAGCCTTAGATTGCTGGGTAATGCAGAACAAGGTTGCCGTGTACAGTAACGGATTATATATTTGGCGCAAAACCATTATAGAATCAATTTACTCATCACTCGGTACATTGACTAACAATGTACTCCCTCCGTTCCATAATATAAGAACGATTTTTACACTACCACATATTCTGATGCTAGTGAAATTCTTATGATTTTGTATGTTCTTTTATTCTCTTATTACCCCAAAAAAATACTATATGATTTT | |||||||||
gi|21145043|gb|BJ466537.1|BJ466537 BJ466537 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): GTTGAATTTATGAAGGCCTTAAAATTGAAAACCATGCACATCAAAGACTCACTTGAAGCAATAGCGAAACTGTTTTCTTCTCCAGGGCGACTCACACTTCTTGAAGGGTTCAGGGTCTTTGTTTCTAAGAATCATCTTCCATTATATGAGCAGCTTGTTAAAAAATATACCATGGCTAATACATAATGACATCATCTGTTGCACATATTTAAAGATGAAATGTGGAAAAACCTCGAGAAGCAAGCCCAAAGAATTCCACTGAATTCATGCAATTAACTTATGGGAAGTGTAAGTTCTTGAAGCCATCTGAGGTTTTCATCCCAATCAGTGCATTGCACATATCGTGGAGTATGTGTAGGGATCTTCAACTGTAAATTAAAAAATGTAATTATCCCATATTATGTTTCTGGAAATAGGTTTATATAACTCATTATCTGTAGTTTGGTGCTGGTACATTTGGTTTAATGAGCATTCCCATGTTTTCAGCAATGGGCTTAGCTTATGGTTGTTGTGTTGAACTTATGTTGTACTCCCTCCGTCCCACAATATAAGAACGTTTTGACGCTACAC | |||||||||
gi|161458170|gb|EX591356.1|EX591356 HDP07P09T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP07P09, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): CCCCATACGCTGTTCTACCATGCCTTATCTTGAACAATCATTCAGCACATCATGTCATCCTCAACCGTCGTAAAACAGTTCGTCCATCAGCATCCGCAACATGGTAAAACACACGAGCGGGTTCCAGGAAGGCTTACATGCATCCACTGGTAAATTTAACCGCTTCTGCCAAGATTGAGATGTATTCCCTCCGCCCCATAATATAAGAGTGTTTATTATGGGACGGAAGGAGCAACAAATATCCATGTCATGCTTCAAGGCTTCAACAAAGCAGCGCCTTATTCTCGACTTAACCCGCCGCTAGTTACGAGTTATGACCTGCTTGTGCTGACATCGATAGCTTTAACTAGAACAATCCATCTCTCAGCTCATCTAGTGATATGTTAGCAGCACTCTCCCCAGATTTAACCAGACGAATCTTACCATCACCCCGAATACAGATCTCCGGTATATTCCTGACTTGACCATCAATTCCATCATTGTAGATCCTGG | |||||||||
gi|166076270|gb|FD528434.1|FD528434 RUS97E11w HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51I02, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): AATTAATATATACCCCCTCTGTCCCATAATATAAGATTGTTCTTCAAGCTATGTGTACAACTATAAGAAAAAGAAAGAGAAATTGTGTAAGATGAAGAAAGCTAACTCTATTACTAATACTAATAAAGATCCAAAGGCATCCGTGCGAACACAACACTGAGTTATTAGGTGATTGTCCAGCAACACAACTTTTCACATAATTCAATCCATCCCCAGTGCGGCATGTTAAACACCACATGAAAAAGATGCTCTAAAGGAACAAATAGCTAAAAAGGGTGTGCCATGAAAATTGCTAGCATCTTCTGCCCTGAGCTTGTGTTGCTCGATCTGATTTCCCCAGAATGTGATATCTGCAATTGATGTGATCCTATTATGTGGGTCCCATTGCTACAAACTCGCTTGATTTAAACACCTCCTCAAGAGGTTGTCTAAGCATGTTGTAGTATCCATGTTCATAATGCCTTGTGTCCCTCCAAAAATGCTCAAGATTTCCCTTCCACACCTTGTTTGCATGATCAACCTTTAGGAGGAGGTCTGCCATTTGAACAGTGTCATGACATGTATCATCTTTTCTTGGTAAGAATTTTTGAAGATCCATTATTCCTTGGATTGCATAGCATCCATCAAAGCAATTCTCAGTTAAATCATTAAATTTCT | |||||||||
gi|21060456|gb|AJ461536.1|AJ461536 AJ461536 S00002 Hordeum vulgare subsp. vulgare cDNA clone S0000200082F02F1, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): TTGCTGCCACGTATTTGTGGCTATTGTTTCTATATTACTCCCTCTGTCCCATAATATAAGAATGTTTTGCAAGCTATCGTAATATAAGAATGTTTTGCTTATATTATGATAGCTTTAAAAACATTCTTATGTCATTGGACGGAGGGAGCATTAGTTTAGCTTTCTGTCCTAGTCCTGTGG | |||||||||
gi|161481334|gb|EX590593.1|EX590593 HDP12E11w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12E11, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): CGAGGAGATGGTCGACGCCGGGTGCTACCCGGACGCCGGGACCGCCAAGGTGCTCGTCGCCGCCTGCTCCGACGAGCGGCAGGTGGAGCAGGTCACCGCCATCGTCAGGTCCATGCACAAGGAGGCCAAGACATTGTTCACCATATGACAAAGATGAAGGAAAATCTTGTGCTAATTAGCTAGTGTAGACCAGATAAGATTACTCCTTCATGGATTGTTTATCTATTATTTCCCGGTCCCATGATATAAGAGTGTTTTCGTTCCATGATATAAGAGTGTTTCTAATACTCTCGTATCACGGGAAAACACCCTTATGTCAACACTTTTATATCATTGGGACGGAGGGAGTACATTACAAAATTTTGCTGTTTCACAAAATCGATTGAAAAGTCAATTAT | |||||||||
gi|161478728|gb|EX594166.1|EX594166 HDP32M19T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP32M19, mRNA sequence ACATTCTTATATTATGGGACGGAG EST sequence (targeted fragment marked with yellow): GTCATCGTCAACCGTCGTAAAACAGTTCGTCCATCAGCATCCGCAACATGGTAAAACACACGAGCGGGTTCCAGGAAGGCTTACATGCATCCACTGGTAAATTTAACTGCTTCTGCCAAGATTGAGATGTATTCCCTCCGCCCCATAATATAAGAGTGTTTATTATGGGACGGAAGGAGCAACAAATATCCATGTCATGCTTCAAGGCTTCAACAAAGCAGCGCCTTATTCCCGACTTAACCCGCCGCTAGTTACGAGTTATGACCTGCTTGTGCTGACATCGATAGCTTTAACTAGAACAATCCATCTCTCAGCTCATCTAGTGATATGTTAGCAGCACTCTCCCCAGATTTAACCAGACGAATCTTACCATCACCCCGAATACAGATCTCCGGTATATTCCTGACTTGACCATCAATTCCATCATTGTAGATCCTGGTTTCGATATCACCCTCAATATATACCGCAGAGTTTTTCACCAACTTCTGAACAGCATAAGCACCTAGATGCTCGCTATGAACAGCTATGCGATGCCACTGAGCCGGCTTTGGTGTATCCGCAGACCCAATGACCCTCTGGTCAAACATGCCACCAGTTCCAATAGTGAATATAGTTACCGTCCGCCCATTACGTAAAATTTTCTGCACAGGCGCTTGTCCAACTTTACCACATATTATAGCCCTATGAACGCCACGGAATC | |||||||||