| mature miRNA: ACCAACGCTCTTGGGCTTGAG species: Phaseolus vulgaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166972772|gb|FD794246.1|FD794246 08VNAA8_T7_034_H01_16MAR2006_001 08VNAA8 Phaseolus vulgaris cDNA, mRNA sequence ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): TGGCAGCACCATCAGCAAGGAACTTCACATGCTTGTTCTCTGGGAAAGTTTTGGCCCATGAGTTCATCACAAAGGGGTCATTCACACTGATACAGATTACTTCATCCACACCCTTTCCTTTCAGCTCTTCTGCTCTCTCAATGAAGCCGGGCACGTGCTTCAAGCTGCATGTAGGAGTGAAGGCACCGGGAACACCAAAGATGATAACTTTCTTGCCGGCGGCAAGAGAGTGAATGGAAACAGTTTGGGGTTTGTTTTCATCATCCAGATAAGCCAAAATGCCGTCTGGAATAGCATCTCCCACAGCAATTGGAGCCATTTTCACAAAGATGATGTATGAATTTGTGTTCTTTCAGAAGCTTATTTATTTCCATAACATGCACCACATCATAACCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGGGCATCAAAAGAGTCACAAACATTGGGGACATCAAAGAACCAACACAGCTATGAGGAAGGATTGAAGGGTTTTTTAAAGAGCCTTGATGATCTCTTCAGCACTGGAGACAGTGAACTCTCCTCCACTTTCAACATTGGCAACCTTCACCTTGAGGTCTTCCACCAGAAGAGCAAACCTCCCTGATCGAACACCAAGCCCCTTCTCAGTGAGGTCAAGCTCAAGCCCAAGGGCGTTGGTG | |||||||||
gi|312057681|gb|GW891464.1|GW891464 PVUSE1NG-UP-004_C13_18JULY2008_061 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): AACTCCAAAACACTCCAAACTAGTAAGCTTATTTATTTCCATAACATGCACCACATCATACCCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGAGCATCAAAAGAGTCACAAACATTGGGGACATCAAAGAACCAACACAGCTATGAGGAAGGAATGAAGGGTTCTTAAAGAGCCTTGATGATCTCTTCAGCACTGGAGACAGTGAACTCTCCTCCACTTTCAACATTGGCAACCTTCACCTTGAGGTCTTCCACCAAAAGAACAAACCCCCTTGATCGAACACCAAGCCCCTTCTCTGTGAGGGCAAGCTCAAGCCCAAGAGCGTTGGTGTATTTGGCAGCACCATCAGCAAGGAACTTCACATGCTTGTTCTCTGGGAAAGTTTTGGCCCATGAGTTCATCACAAAGGGGTCATTCACACTGATACAGATTACTTCATCCACACC | |||||||||
gi|166974945|gb|FD797190.1|FD797190 09VNAN9_T7_020_F09_30JUN2006_069 09VNAN9 Phaseolus vulgaris cDNA, mRNA sequence ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): AAGTTGAACATGTTACTTCTGTGAATCTTTTTTTTAACTCCAAAACACTTCAAACTAGTAAGCTTATTTATTTCCATAACATGCACCACATCATAACCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGGGCATCAAAAGAGTCACAAACATTGGGGACATCAAAAAACCAACACAGCTATGAGGAAGGATTGAAGGGTTTTTTAAAGAGCCTTGATGATCTCTTCAGCACTGGAAACAGTGAACTCTCCTCCACTTTCAACATTGGCAACCTTCACCTTGAGGTCTTCCACCAAAAAAACAAACCTCCTTGATCGAACACCAAGCCCCTTCTCAGTGAGGTCAAGCTCAAGCCCAAGGGCGTTGGTG | |||||||||
gi|312057219|gb|GW891101.1|GW891101 PVUSE1NG-UP-002_N22_18JULY2008_083 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): CGTAAGCTTATTTATTTCCATAACATGCACCACATCATACCCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGAGCATCAAAAGAGTCACAAACATTGGGGACATCAAAGAACCAACACAGCTATGAGGAAGGAATGAAGGGTTCTTAAAGAGCCTTGATGATCTCTTCAGCACTGGAAACAGTGAACTCTCCTCCACTTTCAACATTGGCAACCTTCACCTTGAGGTCTTCCACCAAAAAAGCAAACCTCCTTGATCGAACACCAAGCCCCTTCTCTGTGAGGTCAAGCTCAAGCCCAAGAGCGTTGGTGTATTTGGCAGCACCATCAGCAAGGAACTTCACATGCTTGTTCTCTGGGAAAGTTTTGGCCCACGAGTTCATCACAAAGGGGTCATTCACACTGATACAAATTACTTCATCCACACCCTTTCCTTTCAGCTCTTCTGCTCTCTCAATGAAGCCGGGCACGTGCTTCAAGCTGCATGTAGGAGTGAAGGCACCGGGAACACCAAAGATGATAACTTTCTTGCCGGCGGCAAGAGAGTGAATGGAAACAGTTTGGGGTTTGTTTTCATCATCCAGATAAGCCAAAATGCCGTCTGGAATAGCATCTCCCA | |||||||||
gi|171504858|gb|FE703153.1|FE703153 Pv033D_M13F_H02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA seque ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): GCAAGACAGAAAGAAGTTGAACATGTTACTTCTGTGAATCTTTTTTTTAACTCCAAAACACTTCAAACTAGTAAGCTTATTTATTTCCATAACATGCACCACATCATAACCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGGGCATCAAAAGAGTCACAAACATTGGGGACATCAAAGAACCAACACAGCTATGAGGAAGGATTGAAGGGTTTTTTAAAGAGCCTTGATGATCTCTTCAGCACTGGAGACGGTGAACTCTCCTCCACTTTCAACAATGGCAACCTTCACCTTGAGGTCTTCCACCAGAAGATCAAACCTCCTTGATCGAACACCAAGCCCCTTCTCAATGAGGTCAAGCTCTCGCCCAAGGGCGTTGGTGTACTTGACAGCACCATCAGCAAGGAACCTCACAAGCTTGTTCTCTGGGAAAGTTTTGGCCCATGAGTTCATCACAGACGGGTCAGTTCACTAC | |||||||||
gi|187433178|gb|FG233758.1|FG233758 pvrebbc010002_M19_M1321_phred13_vc root hairs of Phaseolus vulgaris harvested 24 hours after ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): TGAACATGTTACTTCTGGGAATCTTTTTTTTAACTCCAAAACACTTCAAACTAGTAAGCTTATTTATTTCCATAACATGCACCACATCATAACCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGGGCATCAAAAGAGTCACAAACATTGGGGACATCAAAGAACCAACACAGCTATGAGGAAGGATTGAAGGGTTTTTTAAAGAGCCTTGATGATCTCTTCAGCACTGGAGACAGTGAACTCTCCTCCACTTTCAACATTGGCAACCTTCACCTTGAGGTCTTCCACCAAAAGAGCAAACCTCCTTGATCGAACACCAAGCCCCTTCTCAGTGAGGTCAAGCTCAAGCCCAAGGGCGTTGGTGTACTTGGCAGCACCATCAGCAAGGAACTTCACATGCTTGTTCTCTGGGAAAGTTTTGGCCCATGAGTTC | |||||||||
gi|312056173|gb|GW884232.1|GW884232 PVUSE1NG-RP-006_D24_02DEC2008_094 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): GGTGTGTGTGTGTGTAAGAGTGTGTCCTCTGATGGAAAGAAAAACCTACTCTTCTTTACCTTCAAACTACCTCACTCTTGCTCAACTCCAAGAGCGATGGCTCAACCAACGCAACCAGAATAACCAGTCAGAATCACAAGACGAGGCAAAAATTCAACAATCTCCGAACCGGAACTATCTGAAACAACCGCACCTGCAAGTAGTCGCTCCGAGCAATGGATCCGCCTCCAAGTCCAAGTCTCGTCCTCAGAAGCAGTATGTTGTCAAGATTCGGAACGATTCTGAAACTCACCGCCTGACTGCGGCAGTGGAATCGGATGACCGCCGCAAATCGGTGACTGAAATCGGTGATGGAGGCAAAACCTCCTGTCCGGACCTGGACCTGGACCTGGACCTGAACGGAAAAGCAAAAGGAAAGGGAAAAGGAAAAGACAGTGAATCAAATTTGAAGATTAGGAAAGTGAAACCTGAGGAGAGAGAAGGTTCTGGAACAACGGCACAGGAGAAGGAAAAAGCGACTATGGAGAGCGAGGTGAAGGAGAAGGAGAATGGTTGCGTAAAGATGAATGAGGTTGAAGAGAGAGTTAGGGTTTTATCGATTAAATCATCAGAAAATGGAAAACGGAAGGGAAGATTAGGGAAAATGAATAACGGTTTTGTGCAGCAGAGGAGGTACGGAGGAGGAGAGAGGAAGATGGTTTGGGTTAGGAAGGATGAGATTTGAGAGTTTGTTGTGTGGTGTTGTTAATCATTGTTTAAGCTTATTA | |||||||||
gi|187431960|gb|FG228973.1|FG228973 pvreabc010002_H24_M13rev_phred13_vc root hairs of Phaseolus vulgaris harvested 24 hours afte ACCAACGCTCTTGGGCTTGAG EST sequence (targeted fragment marked with yellow): CAAACAAGCTTATTTATTTCCATAACATGCACCACATCATAACCTTCTGAAAGCACACAACACCATTACACCTATGAAAATGTTTCAAAGTTTGGGCATCAAAAAAGTCACAAACATTGGGGACATCAAAGAACCAACACAGCTATGAGGAAGGATTGAAGGGTTTTTTAAAGAGCCTTGATGATCTCTTCAACACGGGGGACAGTGAACTCTCCTCCACTTTCAACATTGGCAACCTTCACCTTGAGGTCTTCCACCAAAAAAGAAAACCTCCTTGATCGAACACCAAGCCCCTTCTCAGTGAGGTCAAGCTCAAGCCCAAGGGCGTTGGTG | |||||||||