| mature miRNA: ACCCTCTGTCCCAAAATAATT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222365835|gb|GH726155.1|GH726155 G118.114M16R010926 G118 Triticum aestivum cDNA clone G118114M16, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): CATACCCAATATGTTTTTTTTTTTTTTTTTTGGAATTAAAAAGAAAGGTATTTAGATGTATTTTAGTTTTAGATACATCATTTTTTTTCATTTGGATTACAAGTATTTTCGGACGGAGGGAGTACGTACGAATGCGAAAGATTAATAGGGGAGACCATTATTCAACCAGGACTACAGTAGTAGCAGGGCAGGCGAAACACAGGTATCGTAGCTACAGGGGTATTTATTCAGCCATGAACTCCTCCGGCGAACACTTTTCATGCCATCACTTCACGCCAAACCGCATGCACGCGTCGCACCATCGGTTCGCCCGCCGGTCGGTCGCTCACGGTATCTGGTCGCAGTCGGGGGGGGGGCTGACGGGGATGGACACGCCGCCCTGGCAGAGCGCGGGAAGCTGCCGGGCGCGGACCGGGAGCACGCCGAAGGACGGGCCGGATTGCTCCAGGCACCTGCAGAGCGCGCGGGGGCGCGCCCGGGGTCCCCGCCATCCCTCCGAAGACCCTGAGCGCCCGCGGACAAACACCAACCGGCACCCCCGGGGAAGGAGCCCACCCAAAAACAACCCGAAGGGGAACAACCACACACAAAGGCGAACCAGAAACAACAACAAAAAACAACACACACGGACACCAATGAACAAAAGAAAAACACCACGCCAAGGCACAAACCAAGCAAAACAAAAACAAACATAAAAAAAAACAAAACAACAAACACACAAAAAAAAAACAACAAAAACAAAAAAAAAAAAAAAAAAAAAAACAACAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAGAAAAAANAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAACAAAAAAAAAAAAACAAAAAGAGAATAACGATAA | |||||||||
gi|143799369|gb|CJ965290.1|CJ965290 CJ965290 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul38g0 ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): TCAAACTCGGCCAGCACCTCCCCCTACTCCTCCACCGACTCCCCTCCGCTCCACCGCGCCGCCCTCTCCGCCGACGCCACCTCCGTCCACGTCGTCGGCGCCGGGGCGGGCTCCTCCTTCGTCAACGTCTCCGCCTTCTCGCAGCCGCTCATGCCGACGGCCTCGAAGAAACCAGCAGAATCCAAGGGAAAGGAGGGCGAGGCGAAGAAGAAGAAGAGCAGCAGCAAGAAGAAGATCGGGAGGTTCTTGTCGAGGCTGGTCGGGACGGAGAAGCGGCGGAAAACAGGGGAAGCAGGCGATGGCGGCGAGCTCTTCCATTCCAGCACCATGAAGGAGAAGTCGTCGACCAAGTGGGTTTTCTTTTGATCAGACCGGCCGGCACCGGCCACCAACCATACGAACAAACCATGCTTGGCCTTTCTCGGTTCTCGATCGATCGGGTATTGTTTTTCTTTATTTTCTCTGTTATTTTTTACAAGTACTCTTCTTGAGCTTGATTTGATATTTTTCTCAAGCGCCGTGTATATACACGAGATCAAGTAGCTGACCGTAAGGAGAAGCACACGTATATGGTGAAAAATTGCATATGGTTATTGATTTTTTTAGGACAGAGTGTATAGATGTAAATT | |||||||||
gi|222367894|gb|GH729465.1|GH729465 G750.102C21R010731 G750 Triticum aestivum cDNA clone G750102C21, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): CCCCAACAATCATGACGGTCACGCTCGTCAAGATTTTATTGCTAAGCTGAATTTACTTTATTGCAAAGTTGAATTTACGCAATGCGTGCACAAATTCAACCAACAGGCCGTCTCTTTGAAACACACATAAAACATACTCCCCTCGTCCCAAAAATGTCTCAACTTTAGTAACATTAGTACTAAAGTTGAGACACTTGTTTTGGGACGGAGGGAGTATATGGTAGGTGCTACCATGCCCTTGCTCAGGCTGGAACTTCGTCCGAAGAAGGGTATGTCTGAAGAACGTAAACCGGGTCGCCGACCTTGACGATCCTCCCTTTTCCCTTTGCTGATACCGCTTCCTTGCAGACCAGATATTGCCCAAAGTACACCTTGTGTTTATTCTTGTGGCTCGGACGGATCACTTCACCGGACCGGAATGTCAGCATAGTTTCTGCTGGTTCGGTGCCAAGTATTCCGTTCTCTTGATTAACGGTTGGCACCTTGCAACGGTCGCATAACTTCACCCCGTCAAATGTCAGCTGGTTTATCTTTATG | |||||||||
gi|222368849|gb|GH731968.1|GH731968 OV.101J14R010424 OV Triticum aestivum cDNA clone OV101J14, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): GTTTGATATATGATGAAAATTAGTTTGGGACAGAGGTTTGTCCGCAAATTAACAGGGTCCCCATTACAAATTAATTAACTACTACCATGCAGGCAAGCAAACAGTTGATCAAACTGGCCGGAGTGCCATTCTTGCAAGTCTGCTTAATCAATGACTACAACTCACGACATGCTCACATCACACACATAACTCAACGAAACAGAAGTAGGCATGCTCCTAACTCGTCGATGGAGACCACGCGAACACATACACACACATACACACAGTGTAGTTTGTTGCAGTTTGATCTGTCACGTGCGTGCTGACTGCATTGCATTCTTCTCTTCACCGATCAGTTGAAAGCATTAGTGATTGTCAGCATCAGGTTGACGAACTGCATCGCGAGAGTAAGGTTGATGAAGCCGTTGGAGTCGTTGGTGTCGCTGGGTTCGCTGCGAGGCACCAGCGCAGTGGAGAGCAGTGTGGTGGCCGAGGGGGCGACGGTGTCGGCGTACGACACGAAGCAGCCGTCGTTCCAGACGCCGGCGAGCCGGGTGGTGGCGGCGCCGCAGCCGTCGGTCAGGTTCTTGGCCAGCGCGGACAGGCACGCGAGGCAGTCTGACGGCGCGGCGTCGCCGAAGCAGACCCCGCGGGCGAGCGTGCGGTCGGACCGCAGGGACGCGAAGCCCGTCGGCGCGGCGGCCGAGGGGA | |||||||||
gi|222367349|gb|GH731872.1|GH731872 OV.002G19F010109 OV Triticum aestivum cDNA clone OV002G19, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): ATGCAACTAACCGTGATCGCCTTTTGGTTTGATAGGGTTTACCACTTCAGTAGTTAGTTAGATTTTTCTATTGTGGTACCATTTACATGGACACTAGTACTAATCCTAGTTCTTAGATTGCAGAGTACCCCTTATATCTTTGTATATGTGCAGCTCCTGCCCATGGAAATCATGTAGAATGGTACTCCCTGTGTCCCAAAATTCTTGTCTTAGATTAGTCTAGATACGGATGTATCTAATACTAAAACGTGACTTGATACTTCCGTATTTGGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATATGTGGACCATCCTGTTATGGTTTATTTTACCATGATATTACTAAAATGTTGTACTTTAGTGGCATGTTCTACATTTAGACAGCTAATGTTACCTGGC | |||||||||
gi|222368850|gb|GH731969.1|GH731969 OV.101J14R010430 OV Triticum aestivum cDNA clone OV101J14, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): GTTTGATATATGATGAAAATTAGTTTGGGACAGAGGTTTGTCCGCAAATTAACAGGCTCCCCATGACAAATTAATTAACTACTACCATGCAGGCAAGCAAACAGTTGATCAAACTGGCCGGAGTGCCATTCTTGCAAGTCTGCTTAATCAATGACTACAACTCACGACATGCTCACATCACACACATAACTCAACGAAACAGAAGTAGGCGTGCTCCTAACTCGTCGATGGAGACCACGCGAACACATACACACACATACACACAGTGTAGTTTGTTGCAGTTTGATCTGTCACGTGCGTGCTGACTGCATTGCATTCTTCTCTTCACCGATCAGTTGAAAGCATTAGTGATTGTCAGCATCAGGTTGACGAACTGCATCGCGAGAGTAAGGTTGATGAAGCCGTTGGAGTCGTTGGTGTCGCTGGGTTCGCTGCGAGGCACCAGCGCAGTGGAGAGCAGTGTGGTGGCCGAGGGGGCGACGGTGTCGGCGTACGACACGAAGCAGCCGTCGTTCCAGACGCCGGCGAGCCGGGTGGTGGCGGCGCCGCAGCCGTCGGTCAGGTTCTTGGCCAGCGCGGACAGGCACGCGAGGCAGTCTGACGGCGCGGCGTCGCCGAAGCAGACCCCGCGGGCGAGCGTGCGGGCGGACCGCAGGCACGCGAAGCCCGTCGGCGCGGCGGCCGAGGGGAGCGCGCCGAGGAGCGGGAGGAGG | |||||||||
gi|222370498|gb|GH729761.1|GH729761 G750.106K06R010801 G750 Triticum aestivum cDNA clone G750106K06, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): GCTAAGCTGATTTACTTTATTGCAAAGTTGAATTTACGTAGAGTGTGCACAAATTCAACCAACAAGTCGTCTCTTCGAAACACACATAAAACATACTCCCTCTGTCCCAAAAATGTCTCAACTTTTAGTAACATTAGTACTAAAGTTGAGACACTTGTTTTGGGACGGAGGGAGTATATGGTAGGTGCTACCATGCCCTTGCTCAGGCAGGAACTTCGTCGGATGAAGGGTACGTCTGAAGAACATAAACCGGGTCGCCGACCTTGACGATCCTCCCTTTTCCCTTTGCTGATACCGATTCCTTGCAGACCAGATATTGCCCAAAGTACACCTTGTGTTTATTCTTGTGGCTCGGACAGATCACTTCACCGGACCGGAATGTCAGCATAGTTTCTGTTGGTTCGGTGCCAAGTATTCATTCTCTTGATTAACG | |||||||||
gi|222371606|gb|GH732592.1|GH732592 OV.109L06F010309 OV Triticum aestivum cDNA clone OV109L06, mRNA sequence ACCCTCTGTCCCAAAATAATT EST sequence (targeted fragment marked with yellow): CATCCATGTCCATATTGTGCATATCTATACTGGATTTTTTAATCTTTTAAATGTCATTATAGACTCCTTTACTAAATCACCTCTCTTTATCCTTACCATTAAGATGAATAAGTACAAAGTTGTACTAAAGTTGAGACATTTATTTTGGGACAGAGGGAGTAGAATGTTAAAAAGCAAACATCTGTATACCCAGTTTATCAATTCAAGTACGGGGCTAAGGCATGAAAACTGCATTTTATCAAACAACAATACAGTAAAAAAATACAGATGGAGCTGCAGTTTGCATGTTTAAAACTAATGTGTATGTAAATATTAGGGACATTTTCTTATGAGCACCTGCAATATTTGCACAAATTTCTTTCCTAATGATGGTCAATTCTTTAGATTTTTTTCATAGTACAGATGTCTATCACCACAAATGGCATGAGTCCATAAGTATTTATATTTTAAGAGTTCATAAGTTGGGTTGACTGTGAGACTCTAAATACATGATACATGGTCTTCTACAATTTATATTACTGACCACTGAAGTGTTTTATATGTTAGTATCTTAACATAAATATTTTTGTGATTAAAAAGTTTCAGCTTATTCCTTTGAATGACCTGAGAAATATATTTGGATCAGGTAAGCGTGAAGCACAGGCATACAGAAATAGGCTTACAGAATCCTGTGGTACTGTTTTGGCTGCTGCTCCTAACAAAGC | |||||||||