| mature miRNA: ACCGGCTGGACGGTAGGCATA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60289435|gb|DN187674.1|DN187674 HO25E23w HO Hordeum vulgare cDNA clone HO25E23 3-PRIME, mRNA sequence ACCGGCTGGACGGTAGGCATA EST sequence (targeted fragment marked with yellow): GATCAAACCGGTACGATGAAACAGTCATGAATGCCTCTTTCACATCCAACCACCCAACCGGGCCTATTAGTACATGCCTATTTTACAAGCCACTTGGGCTATCAGGCCACTCCAAACGGGCCGAATATGTGTTTTTTGGTCTGGCCGATCGCTTGCTGCCAGAAGCTGCTGCACCGAAACAATCCATTTGCGATTTGAGAAGCCCCCTGTTGGAGTTGGGCGCTGGAGTTGAGGATTTTGCAGCCGTAGGCGGGCAATTTCACTGTTTTGACTTTTTTTTACATAGTTTGGCCCGACTCGGTTTGCGATTTTTTTTTCTGTATCTGACACTTTTTCCTACCGTCACCCGCTATGGCGGTAGGCATACACATCCTATCGCTGCAAACAATGGCGATAAGGTCGTTTGACTCCGTTGACCCGAAGGAACCATCCGCATTGATCCGAGCCCTACAGTTACTGCTTGTGGCGGTAGGATGTGTATGCCTACCGTCCAGCCGGTTATGGTAG | |||||||||
gi|16313111|gb|BF629053.3|BF629053 HVSMEb0009L01f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hor ACCGGCTGGACGGTAGGCATA EST sequence (targeted fragment marked with yellow): ATTCTTATACAGAAATTAAAGCCAACGGGCCAACCATGGCAATCAGCAAGAGTATTAAAAGTGTGGTTATTTGTGTTCTCATACTGGGTTTAGTTCTGGAGCATGTCCAAGTAGAAGGCAAGAGTTGCTGCTAGAACACCACGGGCAGAAACTGCTACAACGCCTGCCGTTTAGCCGGTGGTTCCCGACCAGTCTGCGCAACTGCTTGTGGTTGTAAAATCATAAGCGGCCCAACATGTCCTAGGGACTATCCTAAGCTGAATCTTCTTCCTGAATCCGGTGAACCAAATGCGACTGAGTACTGCACAATTGGATGCAGGACTTCCCTCTGTGACAACATGGACAATGTTTGCCGTGGCCAAGAGATGAAATTCGACATGGGACTCTGCAGCAACGCATGTGCCCGTTTCTGTAATGATGGTGATGTCATTCAGTCTGTTGAAGCCTAATCATGCCTTCTTGGGCATGATTTCTATGGCCAAGGTCGTTTTGTCATTTTCTGTTCAACAATCTTGATACCATCACCAGATCGAAGCAAATGTATCATCTTAGTTATGTATTTCTGTTTTTTCCCTCGTTCCAATAAGAGTCACCACGATGAATCTATTTATACCCTTGGGTTAATATAAAGGTTCCATGGATATATTATGTGATAAAAAAAAAAAAAAAAAAA | |||||||||
gi|40952702|gb|CK567128.1|CK567128 HO05M12w HO Hordeum vulgare cDNA clone HO05M12 3-PRIME, mRNA sequence ACCGGCTGGACGGTAGGCATA EST sequence (targeted fragment marked with yellow): ACGGCCAATTGCCACCGTCGTCAAGTGACTTTGATCAAACCGGTACGATGAAACAGTCATGAATGCCTCTTTCACATCCAACCACCCAACCGGGCCTATTAGTACATGCCTATTTTACAAGCCACTTGGGCTATCAGGCCACTCCAAACGGGCCGAATATGTGTTTTTTGGTCTGGCCGATCGCTTGCTGCCAGAAGCTGCTGCACCGAAACAATCCATTTGCGATTTGAGAAGCCGCCTGTTGGAGTTGGGCGCTGGAGTTGAGGATTTTGCAGCCGTAGGCGGGCAATTTCACTGTTTTGACTTTTTTTTACATAGTTTGGCCCGACTCGGTTTGCGATTTTTTTTTCTGTATCTGACACTTTTTCCTACCGTCACCCGCTATGGCGGTAGGCATACACATCCTATCGCTGCAGACAATGGCGATAAGGTCGTTTGACTCCGTTGACCCGAAGGAACCATCCGCATTGATCCGAGCCCTACAGTTACTGCTTGTGGCGGTAGGATGTGTATGCCTACCGTCCAGCCGGTTATGGTAGAAAAAAGGATCATATCCAAAAAAAAATCATAAACAAGGGTCAGATCAGGGCAAAGTTAGTAAAAAGATCAAAGCCGTGAATTTATACTTCTGGGCAACTACTGACCACACCCTTAATAGTATCCCATGAGTGCCCCCTAATTATTGCAAGCGACAATGCAG | |||||||||